miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 66327 1.13 0.001086
Target:  5'- uCCCGGGUACGGAUGCGCAGGUGGACCa -3'
miRNA:   3'- -GGGCCCAUGCCUACGCGUCCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 22884 0.86 0.073126
Target:  5'- gCCCGGGUuCGGGUG-GCAcGGUGGGCCg -3'
miRNA:   3'- -GGGCCCAuGCCUACgCGU-CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 102462 0.86 0.075041
Target:  5'- aCCCGGGUACGGGUGgGCGGGaGGAg- -3'
miRNA:   3'- -GGGCCCAUGCCUACgCGUCCaCCUgg -5'
5237 5' -58.5 NC_001798.1 + 3004 0.81 0.152596
Target:  5'- cCCCGGGcGCGGggGCGC-GGcGGGCCg -3'
miRNA:   3'- -GGGCCCaUGCCuaCGCGuCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 147216 0.8 0.194782
Target:  5'- gCCCGGGcccccgGCGGA-GCGCGGGggccccgGGGCCc -3'
miRNA:   3'- -GGGCCCa-----UGCCUaCGCGUCCa------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 150415 0.78 0.258522
Target:  5'- aCCaCGGGggcgGCGGcgGCGCGGGgcGGACUc -3'
miRNA:   3'- -GG-GCCCa---UGCCuaCGCGUCCa-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 27217 0.77 0.26454
Target:  5'- cCCCGGG-GCGGG-GCGCGGGggagGcGGCCg -3'
miRNA:   3'- -GGGCCCaUGCCUaCGCGUCCa---C-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 147907 0.77 0.283276
Target:  5'- uCCCGGGg--GGGcagGCGCGGGUcGGGCCc -3'
miRNA:   3'- -GGGCCCaugCCUa--CGCGUCCA-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 13045 0.76 0.338319
Target:  5'- gCCGGGg--GGAUGCGCAGGgGGAg- -3'
miRNA:   3'- gGGCCCaugCCUACGCGUCCaCCUgg -5'
5237 5' -58.5 NC_001798.1 + 117192 0.74 0.409036
Target:  5'- cCCCGGGUuCGGGUucaccgucGUGCGGcaGGACCg -3'
miRNA:   3'- -GGGCCCAuGCCUA--------CGCGUCcaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 36299 0.72 0.488274
Target:  5'- gCCgUGGGUguggcgGCGGG-GCGCGGGccgGGGCCg -3'
miRNA:   3'- -GG-GCCCA------UGCCUaCGCGUCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 76941 0.72 0.488274
Target:  5'- cCCCGGaaGUcACGGcgGCGCugcGGGcGGACCu -3'
miRNA:   3'- -GGGCC--CA-UGCCuaCGCG---UCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 2264 0.72 0.506864
Target:  5'- gCCGGGggGCGGGgcgGCGCAGcGcGcGGCCa -3'
miRNA:   3'- gGGCCCa-UGCCUa--CGCGUC-CaC-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 153028 0.72 0.506864
Target:  5'- gUCCGGGcccgcGCGGcgGCGCGcGGUuGGCCg -3'
miRNA:   3'- -GGGCCCa----UGCCuaCGCGU-CCAcCUGG- -5'
5237 5' -58.5 NC_001798.1 + 151164 0.72 0.525748
Target:  5'- gCCGGGccACGGGgggguggGCGaCAGGgcgcGGACCg -3'
miRNA:   3'- gGGCCCa-UGCCUa------CGC-GUCCa---CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 51337 0.71 0.544892
Target:  5'- -gCGGGUggGCGGuu-CGCGGGUGGugCc -3'
miRNA:   3'- ggGCCCA--UGCCuacGCGUCCACCugG- -5'
5237 5' -58.5 NC_001798.1 + 154097 0.71 0.544892
Target:  5'- gCCGGGgcGCGGccgGCGCcGG-GGACCc -3'
miRNA:   3'- gGGCCCa-UGCCua-CGCGuCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 36083 0.71 0.564256
Target:  5'- gCgGGGUAggUGGGUGgGCGGGUGGuggggggggGCCc -3'
miRNA:   3'- gGgCCCAU--GCCUACgCGUCCACC---------UGG- -5'
5237 5' -58.5 NC_001798.1 + 123936 0.71 0.574008
Target:  5'- cCCUGGGUcCGGggGC-CuGGUGGcACCu -3'
miRNA:   3'- -GGGCCCAuGCCuaCGcGuCCACC-UGG- -5'
5237 5' -58.5 NC_001798.1 + 12700 0.71 0.574008
Target:  5'- gCCCGGGUugcugggggcgGCGGggGCGU-GGUGcGGCg -3'
miRNA:   3'- -GGGCCCA-----------UGCCuaCGCGuCCAC-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.