miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 154372 0.66 0.85212
Target:  5'- cCCCGGGggggguguuuuUugGGGggggGCGCgaAGGcGGGCg -3'
miRNA:   3'- -GGGCCC-----------AugCCUa---CGCG--UCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 154270 0.66 0.84443
Target:  5'- uCCCGGc--UGGcGUGCGCAGcccGGGCCg -3'
miRNA:   3'- -GGGCCcauGCC-UACGCGUCca-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 154097 0.71 0.544892
Target:  5'- gCCGGGgcGCGGccgGCGCcGG-GGACCc -3'
miRNA:   3'- gGGCCCa-UGCCua-CGCGuCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 153069 0.71 0.59362
Target:  5'- cCCUGGGgcggGCGGA-GCgGCGGGgcggcgccGGGCCc -3'
miRNA:   3'- -GGGCCCa---UGCCUaCG-CGUCCa-------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 153028 0.72 0.506864
Target:  5'- gUCCGGGcccgcGCGGcgGCGCGcGGUuGGCCg -3'
miRNA:   3'- -GGGCCCa----UGCCuaCGCGU-CCAcCUGG- -5'
5237 5' -58.5 NC_001798.1 + 152679 0.66 0.855144
Target:  5'- cCCCGGGgaaaaauucuuagcaUACuaGGAaGCcCAGG-GGACCa -3'
miRNA:   3'- -GGGCCC---------------AUG--CCUaCGcGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 151164 0.72 0.525748
Target:  5'- gCCGGGccACGGGgggguggGCGaCAGGgcgcGGACCg -3'
miRNA:   3'- gGGCCCa-UGCCUa------CGC-GUCCa---CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 150566 0.67 0.803415
Target:  5'- gCCCGGGgcccGCGGGgcgGCGCGGaGacGGCg -3'
miRNA:   3'- -GGGCCCa---UGCCUa--CGCGUC-CacCUGg -5'
5237 5' -58.5 NC_001798.1 + 150415 0.78 0.258522
Target:  5'- aCCaCGGGggcgGCGGcgGCGCGGGgcGGACUc -3'
miRNA:   3'- -GG-GCCCa---UGCCuaCGCGUCCa-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 150367 0.68 0.767957
Target:  5'- aCCGGcacgGCGGGcgGCGCGGGcccGGCCg -3'
miRNA:   3'- gGGCCca--UGCCUa-CGCGUCCac-CUGG- -5'
5237 5' -58.5 NC_001798.1 + 150210 0.7 0.623218
Target:  5'- aCCGGGggUGuuGGUGcCGCGGG-GGACCc -3'
miRNA:   3'- gGGCCCauGC--CUAC-GCGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 149659 0.67 0.820306
Target:  5'- gCCGGGcgcCGGGU-CGCGGGccccgggcucgGGGCCg -3'
miRNA:   3'- gGGCCCau-GCCUAcGCGUCCa----------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 149456 0.66 0.85212
Target:  5'- --aGGGUGCGGcgGCuccacGCGGG-GG-CCg -3'
miRNA:   3'- gggCCCAUGCCuaCG-----CGUCCaCCuGG- -5'
5237 5' -58.5 NC_001798.1 + 148413 0.68 0.749518
Target:  5'- gCgGGGUGggcgcCGGG-GCGgGGGUGGGCa -3'
miRNA:   3'- gGgCCCAU-----GCCUaCGCgUCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 147907 0.77 0.283276
Target:  5'- uCCCGGGg--GGGcagGCGCGGGUcGGGCCc -3'
miRNA:   3'- -GGGCCCaugCCUa--CGCGUCCA-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 147216 0.8 0.194782
Target:  5'- gCCCGGGcccccgGCGGA-GCGCGGGggccccgGGGCCc -3'
miRNA:   3'- -GGGCCCa-----UGCCUaCGCGUCCa------CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 144731 0.68 0.767957
Target:  5'- aCCCGGcccugACGGGUGCGUGGcUGacGGCCu -3'
miRNA:   3'- -GGGCCca---UGCCUACGCGUCcAC--CUGG- -5'
5237 5' -58.5 NC_001798.1 + 143814 0.67 0.803415
Target:  5'- gCCCGGGcgGCGcGcgGC-CAGccguUGGACCa -3'
miRNA:   3'- -GGGCCCa-UGC-CuaCGcGUCc---ACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 136670 0.68 0.74015
Target:  5'- -aCGGGggGCGGAUuguugGCcaGCAGGUaguGGGCCa -3'
miRNA:   3'- ggGCCCa-UGCCUA-----CG--CGUCCA---CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 136000 0.67 0.785944
Target:  5'- uCCCGGGgGCGGGgagucggucgGCGUccccGUGGAUCu -3'
miRNA:   3'- -GGGCCCaUGCCUa---------CGCGuc--CACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.