miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5239 5' -58.3 NC_001798.1 + 24892 0.66 0.795863
Target:  5'- cGCCGgg-GCccuGGGCCCgGCGcUGCCGc- -3'
miRNA:   3'- -CGGCacaCG---UCCGGGaCGU-ACGGUua -5'
5239 5' -58.3 NC_001798.1 + 37404 0.66 0.795863
Target:  5'- aCCGg--GCGGGUCCgugggGCcgGCCGAc -3'
miRNA:   3'- cGGCacaCGUCCGGGa----CGuaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 96341 0.66 0.786722
Target:  5'- uGCgCGUGcUGCGgcGGCaCCUGCG-GCCGGg -3'
miRNA:   3'- -CG-GCAC-ACGU--CCG-GGACGUaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 34979 0.66 0.786722
Target:  5'- cGCCGagGUGCGGGggcCCCU-CcgGCCGGg -3'
miRNA:   3'- -CGGCa-CACGUCC---GGGAcGuaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 38254 0.66 0.777442
Target:  5'- gGUCGUGUGCAGGgCguuuucgGCcUGCCAc- -3'
miRNA:   3'- -CGGCACACGUCCgGga-----CGuACGGUua -5'
5239 5' -58.3 NC_001798.1 + 60956 0.66 0.768029
Target:  5'- cGUCGUGUcacCGGGCCCggagGCGcgGCCGu- -3'
miRNA:   3'- -CGGCACAc--GUCCGGGa---CGUa-CGGUua -5'
5239 5' -58.3 NC_001798.1 + 134235 0.66 0.748848
Target:  5'- cCUGUG-GCGGGCgCUGUAUGCg--- -3'
miRNA:   3'- cGGCACaCGUCCGgGACGUACGguua -5'
5239 5' -58.3 NC_001798.1 + 47404 0.66 0.748848
Target:  5'- cCCGUGgguuacGCAGGCCCUcGC-UGCUc-- -3'
miRNA:   3'- cGGCACa-----CGUCCGGGA-CGuACGGuua -5'
5239 5' -58.3 NC_001798.1 + 93559 0.67 0.719322
Target:  5'- gGCCaugcUGUGCGgguucucuccGGCCCUGCugGCCAAg -3'
miRNA:   3'- -CGGc---ACACGU----------CCGGGACGuaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 11234 0.67 0.709317
Target:  5'- gGCCGU---CGGGCCaCUGCGggGCCGAg -3'
miRNA:   3'- -CGGCAcacGUCCGG-GACGUa-CGGUUa -5'
5239 5' -58.3 NC_001798.1 + 149665 0.67 0.709317
Target:  5'- cGCCGgGUcGCGGGCCCcggGCucgggGCCGc- -3'
miRNA:   3'- -CGGCaCA-CGUCCGGGa--CGua---CGGUua -5'
5239 5' -58.3 NC_001798.1 + 79054 0.67 0.699246
Target:  5'- uGUCGggGcUGCGGGCCCaGCcgGCCu-- -3'
miRNA:   3'- -CGGCa-C-ACGUCCGGGaCGuaCGGuua -5'
5239 5' -58.3 NC_001798.1 + 69164 0.68 0.678943
Target:  5'- gGCCGg--GCGGaGCCCgaugGCggGCCAGg -3'
miRNA:   3'- -CGGCacaCGUC-CGGGa---CGuaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 74401 0.68 0.675882
Target:  5'- gGCCGUGgcgccgGCGgaccugaccgccgcGGCCCUGCAccucuacgggGCCAGc -3'
miRNA:   3'- -CGGCACa-----CGU--------------CCGGGACGUa---------CGGUUa -5'
5239 5' -58.3 NC_001798.1 + 15545 0.68 0.668728
Target:  5'- uUCGUGUGCccGGCCCcggGCGuUGCCGc- -3'
miRNA:   3'- cGGCACACGu-CCGGGa--CGU-ACGGUua -5'
5239 5' -58.3 NC_001798.1 + 100853 0.68 0.668728
Target:  5'- uGCCGUGgggcUGCuGGUCCUGgCcgGCCu-- -3'
miRNA:   3'- -CGGCAC----ACGuCCGGGAC-GuaCGGuua -5'
5239 5' -58.3 NC_001798.1 + 153702 0.68 0.668728
Target:  5'- cGCCG-GcGCAGGCUCagGCGcGCCAGg -3'
miRNA:   3'- -CGGCaCaCGUCCGGGa-CGUaCGGUUa -5'
5239 5' -58.3 NC_001798.1 + 94239 0.68 0.658483
Target:  5'- cGCCGUGUaccagGaccuGGCCCUGagccaGUGCCAc- -3'
miRNA:   3'- -CGGCACA-----Cgu--CCGGGACg----UACGGUua -5'
5239 5' -58.3 NC_001798.1 + 105420 0.68 0.637938
Target:  5'- gGCCGcgGUGCGcuGGgCCUGCAgcacUGCCGc- -3'
miRNA:   3'- -CGGCa-CACGU--CCgGGACGU----ACGGUua -5'
5239 5' -58.3 NC_001798.1 + 122597 0.69 0.617375
Target:  5'- -gCGUGUcuGCGGGCCCUGg--GCCAc- -3'
miRNA:   3'- cgGCACA--CGUCCGGGACguaCGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.