Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5240 | 5' | -59.4 | NC_001798.1 | + | 75134 | 0.71 | 0.43751 |
Target: 5'- aGGGCgGCgGCgacgacgGGCCcgCGAGCCCGUc -3' miRNA: 3'- -UCUGgUGaCGaa-----CCGGa-GCUCGGGCA- -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 76878 | 0.69 | 0.58019 |
Target: 5'- cGACC-CUGCg-GGCCUCccuGCCCGc -3' miRNA: 3'- uCUGGuGACGaaCCGGAGcu-CGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 86458 | 0.68 | 0.620354 |
Target: 5'- gGGGCCGguucgugagcCUGCUucgGGCCgCGGGCCCc- -3' miRNA: 3'- -UCUGGU----------GACGAa--CCGGaGCUCGGGca -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 92941 | 0.66 | 0.729988 |
Target: 5'- cGGGcCCGCcGCcgUGGCCcugCGuGCCCGg -3' miRNA: 3'- -UCU-GGUGaCGa-ACCGGa--GCuCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 97215 | 0.66 | 0.74919 |
Target: 5'- gAGACCGCcGCggUGGCCgUgGAGCUgGc -3' miRNA: 3'- -UCUGGUGaCGa-ACCGG-AgCUCGGgCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 106734 | 0.66 | 0.74919 |
Target: 5'- -aGCCAUcGCcagggGGCCUCcgGAGCCCGc -3' miRNA: 3'- ucUGGUGaCGaa---CCGGAG--CUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 108437 | 0.71 | 0.446431 |
Target: 5'- aAGACCuauCUGCUcggccGGCCUCGGaacgcgagccuGCCCGa -3' miRNA: 3'- -UCUGGu--GACGAa----CCGGAGCU-----------CGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 113994 | 0.66 | 0.758645 |
Target: 5'- uGugCGggagggGCUUGGCCUuccCGAGCUCGg -3' miRNA: 3'- uCugGUga----CGAACCGGA---GCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 121543 | 0.69 | 0.600226 |
Target: 5'- cGG-CGCUGCgccUGGCgUgGGGCCCGUg -3' miRNA: 3'- uCUgGUGACGa--ACCGgAgCUCGGGCA- -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 122226 | 0.66 | 0.739634 |
Target: 5'- uGGACCGCgggugggaaGCUcUGGCCggcggCGAccgGCCCGa -3' miRNA: 3'- -UCUGGUGa--------CGA-ACCGGa----GCU---CGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 125077 | 0.67 | 0.709473 |
Target: 5'- uGGCCACguccacCUUGGCCcguuucuUCGgggGGCCCGUa -3' miRNA: 3'- uCUGGUGac----GAACCGG-------AGC---UCGGGCA- -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 127306 | 0.67 | 0.69762 |
Target: 5'- cAGACgcugcuggaGCUGCUgguuagcguguacgUGGCCcCGAGCCUGg -3' miRNA: 3'- -UCUGg--------UGACGA--------------ACCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 127632 | 0.69 | 0.570222 |
Target: 5'- gAGGCCGCUGCUggugcUGGUCUCccGCCUc- -3' miRNA: 3'- -UCUGGUGACGA-----ACCGGAGcuCGGGca -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 147025 | 0.68 | 0.620354 |
Target: 5'- cGGGCCGggGCUUGGCCgcCGAGgugcgcCCCGg -3' miRNA: 3'- -UCUGGUgaCGAACCGGa-GCUC------GGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 150133 | 0.68 | 0.650591 |
Target: 5'- gAGGCCGCgg---GGCC-CGAGUCCGa -3' miRNA: 3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 153216 | 0.68 | 0.660652 |
Target: 5'- uAGACCGCccgacGGCC-CGGGCCCGc -3' miRNA: 3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 153306 | 0.71 | 0.446431 |
Target: 5'- uGGGCCcggGCUcGGgCUCGGGCCCGa -3' miRNA: 3'- -UCUGGugaCGAaCCgGAGCUCGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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