miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5240 5' -59.4 NC_001798.1 + 2202 0.69 0.58019
Target:  5'- cAGGCCGCcGCgcGGCgcagCGGGCCCGa -3'
miRNA:   3'- -UCUGGUGaCGaaCCGga--GCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 23032 0.67 0.690669
Target:  5'- uGGCC-CUGC-UGGCCUCGAugguggacgaGgCCGUu -3'
miRNA:   3'- uCUGGuGACGaACCGGAGCU----------CgGGCA- -5'
5240 5' -59.4 NC_001798.1 + 24069 0.67 0.710457
Target:  5'- uGGACCAggcCUGCUUccGGaUCUCGGGCgCGg -3'
miRNA:   3'- -UCUGGU---GACGAA--CC-GGAGCUCGgGCa -5'
5240 5' -59.4 NC_001798.1 + 25324 0.66 0.739634
Target:  5'- gAGGCCuACUGCgccccgcgGGCCguggcCGAGCUCa- -3'
miRNA:   3'- -UCUGG-UGACGaa------CCGGa----GCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 25479 0.78 0.174894
Target:  5'- cGGcCCGCUGCgc-GCCUCGGGCCCGc -3'
miRNA:   3'- -UCuGGUGACGaacCGGAGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 25866 0.66 0.758645
Target:  5'- cGugCGCgccGCggacUGGCCcgccgaCGGGCCCGUg -3'
miRNA:   3'- uCugGUGa--CGa---ACCGGa-----GCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 25986 0.66 0.758645
Target:  5'- -cGCCGCaccgUGC-UGGCCUCcGGCCgCGUg -3'
miRNA:   3'- ucUGGUG----ACGaACCGGAGcUCGG-GCA- -5'
5240 5' -59.4 NC_001798.1 + 26375 0.7 0.530836
Target:  5'- cGGGCCGCggcgggaguucUGCgcgcgGGCgcugCUCGAGCCCGa -3'
miRNA:   3'- -UCUGGUG-----------ACGaa---CCG----GAGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 26550 0.74 0.32723
Target:  5'- gGGACCGCcGCggggcUGGCCacgccgccgaggcgCGAGCCCGUg -3'
miRNA:   3'- -UCUGGUGaCGa----ACCGGa-------------GCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 27165 0.68 0.610282
Target:  5'- gGGGCUGCUGCgagcucggGGCCgCGGGCgCGg -3'
miRNA:   3'- -UCUGGUGACGaa------CCGGaGCUCGgGCa -5'
5240 5' -59.4 NC_001798.1 + 27865 0.66 0.758645
Target:  5'- cGACgCGCUccgGCUccgGGCCUacgcCGAGCCCa- -3'
miRNA:   3'- uCUG-GUGA---CGAa--CCGGA----GCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 28720 0.71 0.43751
Target:  5'- gAGGCC-CgaGCUcgGGCC-CGAGCCCGa -3'
miRNA:   3'- -UCUGGuGa-CGAa-CCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 32354 0.68 0.660652
Target:  5'- -cGCCAC-GCggagggcGGCCcCGAGCCCGg -3'
miRNA:   3'- ucUGGUGaCGaa-----CCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 35462 0.7 0.540599
Target:  5'- cGGCCcguCUGC-UGGCC-CGcGGCCCGUc -3'
miRNA:   3'- uCUGGu--GACGaACCGGaGC-UCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 59286 0.67 0.670691
Target:  5'- uGAa-GCUGCgaagGGCCcCGGGCCCGc -3'
miRNA:   3'- uCUggUGACGaa--CCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 64548 1.06 0.001976
Target:  5'- cAGACCACUGCUUGGCCUCGAGCCCGUc -3'
miRNA:   3'- -UCUGGUGACGAACCGGAGCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 66231 0.67 0.710457
Target:  5'- aGGAUCAUUaGCUgGGCCUCGuGUUCGc -3'
miRNA:   3'- -UCUGGUGA-CGAaCCGGAGCuCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 68786 0.69 0.600226
Target:  5'- uGGCCGgUGUgugUGGCCUCcugGGGUCCGc -3'
miRNA:   3'- uCUGGUgACGa--ACCGGAG---CUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 72144 0.68 0.630434
Target:  5'- cGGCCACccggGCc-GGCgUCGGGCCCa- -3'
miRNA:   3'- uCUGGUGa---CGaaCCGgAGCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 74651 0.67 0.684692
Target:  5'- gAGGCCccccggggGGCCUCGGGCCCa- -3'
miRNA:   3'- -UCUGGugacgaa-CCGGAGCUCGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.