miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5240 5' -59.4 NC_001798.1 + 64548 1.06 0.001976
Target:  5'- cAGACCACUGCUUGGCCUCGAGCCCGUc -3'
miRNA:   3'- -UCUGGUGACGAACCGGAGCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 25479 0.78 0.174894
Target:  5'- cGGcCCGCUGCgc-GCCUCGGGCCCGc -3'
miRNA:   3'- -UCuGGUGACGaacCGGAGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 26550 0.74 0.32723
Target:  5'- gGGACCGCcGCggggcUGGCCacgccgccgaggcgCGAGCCCGUg -3'
miRNA:   3'- -UCUGGUGaCGa----ACCGGa-------------GCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 28720 0.71 0.43751
Target:  5'- gAGGCC-CgaGCUcgGGCC-CGAGCCCGa -3'
miRNA:   3'- -UCUGGuGa-CGAa-CCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 75134 0.71 0.43751
Target:  5'- aGGGCgGCgGCgacgacgGGCCcgCGAGCCCGUc -3'
miRNA:   3'- -UCUGgUGaCGaa-----CCGGa-GCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 153306 0.71 0.446431
Target:  5'- uGGGCCcggGCUcGGgCUCGGGCCCGa -3'
miRNA:   3'- -UCUGGugaCGAaCCgGAGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 108437 0.71 0.446431
Target:  5'- aAGACCuauCUGCUcggccGGCCUCGGaacgcgagccuGCCCGa -3'
miRNA:   3'- -UCUGGu--GACGAa----CCGGAGCU-----------CGGGCa -5'
5240 5' -59.4 NC_001798.1 + 26375 0.7 0.530836
Target:  5'- cGGGCCGCggcgggaguucUGCgcgcgGGCgcugCUCGAGCCCGa -3'
miRNA:   3'- -UCUGGUG-----------ACGaa---CCG----GAGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 35462 0.7 0.540599
Target:  5'- cGGCCcguCUGC-UGGCC-CGcGGCCCGUc -3'
miRNA:   3'- uCUGGu--GACGaACCGGaGC-UCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 127632 0.69 0.570222
Target:  5'- gAGGCCGCUGCUggugcUGGUCUCccGCCUc- -3'
miRNA:   3'- -UCUGGUGACGA-----ACCGGAGcuCGGGca -5'
5240 5' -59.4 NC_001798.1 + 2202 0.69 0.58019
Target:  5'- cAGGCCGCcGCgcGGCgcagCGGGCCCGa -3'
miRNA:   3'- -UCUGGUGaCGaaCCGga--GCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 76878 0.69 0.58019
Target:  5'- cGACC-CUGCg-GGCCUCccuGCCCGc -3'
miRNA:   3'- uCUGGuGACGaaCCGGAGcu-CGGGCa -5'
5240 5' -59.4 NC_001798.1 + 68786 0.69 0.600226
Target:  5'- uGGCCGgUGUgugUGGCCUCcugGGGUCCGc -3'
miRNA:   3'- uCUGGUgACGa--ACCGGAG---CUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 121543 0.69 0.600226
Target:  5'- cGG-CGCUGCgccUGGCgUgGGGCCCGUg -3'
miRNA:   3'- uCUgGUGACGa--ACCGgAgCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 27165 0.68 0.610282
Target:  5'- gGGGCUGCUGCgagcucggGGCCgCGGGCgCGg -3'
miRNA:   3'- -UCUGGUGACGaa------CCGGaGCUCGgGCa -5'
5240 5' -59.4 NC_001798.1 + 86458 0.68 0.620354
Target:  5'- gGGGCCGguucgugagcCUGCUucgGGCCgCGGGCCCc- -3'
miRNA:   3'- -UCUGGU----------GACGAa--CCGGaGCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 147025 0.68 0.620354
Target:  5'- cGGGCCGggGCUUGGCCgcCGAGgugcgcCCCGg -3'
miRNA:   3'- -UCUGGUgaCGAACCGGa-GCUC------GGGCa -5'
5240 5' -59.4 NC_001798.1 + 72144 0.68 0.630434
Target:  5'- cGGCCACccggGCc-GGCgUCGGGCCCa- -3'
miRNA:   3'- uCUGGUGa---CGaaCCGgAGCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 150133 0.68 0.650591
Target:  5'- gAGGCCGCgg---GGCC-CGAGUCCGa -3'
miRNA:   3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 153216 0.68 0.660652
Target:  5'- uAGACCGCccgacGGCC-CGGGCCCGc -3'
miRNA:   3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.