miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5240 5' -59.4 NC_001798.1 + 64548 1.06 0.001976
Target:  5'- cAGACCACUGCUUGGCCUCGAGCCCGUc -3'
miRNA:   3'- -UCUGGUGACGAACCGGAGCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 127306 0.67 0.69762
Target:  5'- cAGACgcugcuggaGCUGCUgguuagcguguacgUGGCCcCGAGCCUGg -3'
miRNA:   3'- -UCUGg--------UGACGA--------------ACCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 23032 0.67 0.690669
Target:  5'- uGGCC-CUGC-UGGCCUCGAugguggacgaGgCCGUu -3'
miRNA:   3'- uCUGGuGACGaACCGGAGCU----------CgGGCA- -5'
5240 5' -59.4 NC_001798.1 + 74651 0.67 0.684692
Target:  5'- gAGGCCccccggggGGCCUCGGGCCCa- -3'
miRNA:   3'- -UCUGGugacgaa-CCGGAGCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 59286 0.67 0.670691
Target:  5'- uGAa-GCUGCgaagGGCCcCGGGCCCGc -3'
miRNA:   3'- uCUggUGACGaa--CCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 153216 0.68 0.660652
Target:  5'- uAGACCGCccgacGGCC-CGGGCCCGc -3'
miRNA:   3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 32354 0.68 0.660652
Target:  5'- -cGCCAC-GCggagggcGGCCcCGAGCCCGg -3'
miRNA:   3'- ucUGGUGaCGaa-----CCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 150133 0.68 0.650591
Target:  5'- gAGGCCGCgg---GGCC-CGAGUCCGa -3'
miRNA:   3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 72144 0.68 0.630434
Target:  5'- cGGCCACccggGCc-GGCgUCGGGCCCa- -3'
miRNA:   3'- uCUGGUGa---CGaaCCGgAGCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 125077 0.67 0.709473
Target:  5'- uGGCCACguccacCUUGGCCcguuucuUCGgggGGCCCGUa -3'
miRNA:   3'- uCUGGUGac----GAACCGG-------AGC---UCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 24069 0.67 0.710457
Target:  5'- uGGACCAggcCUGCUUccGGaUCUCGGGCgCGg -3'
miRNA:   3'- -UCUGGU---GACGAA--CC-GGAGCUCGgGCa -5'
5240 5' -59.4 NC_001798.1 + 66231 0.67 0.710457
Target:  5'- aGGAUCAUUaGCUgGGCCUCGuGUUCGc -3'
miRNA:   3'- -UCUGGUGA-CGAaCCGGAGCuCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 25986 0.66 0.758645
Target:  5'- -cGCCGCaccgUGC-UGGCCUCcGGCCgCGUg -3'
miRNA:   3'- ucUGGUG----ACGaACCGGAGcUCGG-GCA- -5'
5240 5' -59.4 NC_001798.1 + 27865 0.66 0.758645
Target:  5'- cGACgCGCUccgGCUccgGGCCUacgcCGAGCCCa- -3'
miRNA:   3'- uCUG-GUGA---CGAa--CCGGA----GCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 25866 0.66 0.758645
Target:  5'- cGugCGCgccGCggacUGGCCcgccgaCGGGCCCGUg -3'
miRNA:   3'- uCugGUGa--CGa---ACCGGa-----GCUCGGGCA- -5'
5240 5' -59.4 NC_001798.1 + 106734 0.66 0.74919
Target:  5'- -aGCCAUcGCcagggGGCCUCcgGAGCCCGc -3'
miRNA:   3'- ucUGGUGaCGaa---CCGGAG--CUCGGGCa -5'
5240 5' -59.4 NC_001798.1 + 97215 0.66 0.74919
Target:  5'- gAGACCGCcGCggUGGCCgUgGAGCUgGc -3'
miRNA:   3'- -UCUGGUGaCGa-ACCGG-AgCUCGGgCa -5'
5240 5' -59.4 NC_001798.1 + 25324 0.66 0.739634
Target:  5'- gAGGCCuACUGCgccccgcgGGCCguggcCGAGCUCa- -3'
miRNA:   3'- -UCUGG-UGACGaa------CCGGa----GCUCGGGca -5'
5240 5' -59.4 NC_001798.1 + 122226 0.66 0.739634
Target:  5'- uGGACCGCgggugggaaGCUcUGGCCggcggCGAccgGCCCGa -3'
miRNA:   3'- -UCUGGUGa--------CGA-ACCGGa----GCU---CGGGCa -5'
5240 5' -59.4 NC_001798.1 + 92941 0.66 0.729988
Target:  5'- cGGGcCCGCcGCcgUGGCCcugCGuGCCCGg -3'
miRNA:   3'- -UCU-GGUGaCGa-ACCGGa--GCuCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.