miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 67185 0.68 0.722822
Target:  5'- aGgggGGAgGAGggGGCGGggggacaGCCuGGGGUc -3'
miRNA:   3'- gCa--CCUgCUCuuCCGCC-------UGG-UCCCAc -5'
5241 3' -58.4 NC_001798.1 + 96029 0.68 0.7141
Target:  5'- cCGgcgGGGCGGGcGGGCGGGCgAcGGGc- -3'
miRNA:   3'- -GCa--CCUGCUCuUCCGCCUGgU-CCCac -5'
5241 3' -58.4 NC_001798.1 + 6386 0.68 0.7141
Target:  5'- --nGGGCcGGggGGCcgggGGGCCGGGGg- -3'
miRNA:   3'- gcaCCUGcUCuuCCG----CCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 66448 0.68 0.7141
Target:  5'- gCGUGuauGCGuuGGGGgGGACCGGGGg- -3'
miRNA:   3'- -GCACc--UGCucUUCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 34156 0.68 0.7141
Target:  5'- aCGacGACGGGggGGgGGgaaACgGGGGUGg -3'
miRNA:   3'- -GCacCUGCUCuuCCgCC---UGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 122069 0.68 0.704345
Target:  5'- gCGUcGGACGcGGAGGCGGugCuggcGGGc- -3'
miRNA:   3'- -GCA-CCUGCuCUUCCGCCugGu---CCCac -5'
5241 3' -58.4 NC_001798.1 + 45984 0.68 0.704345
Target:  5'- uCGUGGAUGuugucGGGGgGGAuCCAGGGg- -3'
miRNA:   3'- -GCACCUGCuc---UUCCgCCU-GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 52963 0.68 0.704345
Target:  5'- aCGUGucCGGGAGGcGCGcGACCGGGcUGg -3'
miRNA:   3'- -GCACcuGCUCUUC-CGC-CUGGUCCcAC- -5'
5241 3' -58.4 NC_001798.1 + 56203 0.69 0.68467
Target:  5'- nGUGGugGGuacGggGGaCGGAa-GGGGUGg -3'
miRNA:   3'- gCACCugCU---CuuCC-GCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 31146 0.69 0.674766
Target:  5'- --cGGcGCGGGGGcGGCGGugCGGGGg- -3'
miRNA:   3'- gcaCC-UGCUCUU-CCGCCugGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 130896 0.69 0.674766
Target:  5'- --aGGACGuAGAuaAGGUGGGCCAGcuggcugaugcGGUGg -3'
miRNA:   3'- gcaCCUGC-UCU--UCCGCCUGGUC-----------CCAC- -5'
5241 3' -58.4 NC_001798.1 + 31044 0.69 0.673774
Target:  5'- gGUcGGGCGGGGgucGGGCGGgggucgggcacuaACCGGGGg- -3'
miRNA:   3'- gCA-CCUGCUCU---UCCGCC-------------UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 100990 0.69 0.670795
Target:  5'- gCGUGGGCGGGGAGGgGGAggaaggcgcggaGGGGg- -3'
miRNA:   3'- -GCACCUGCUCUUCCgCCUgg----------UCCCac -5'
5241 3' -58.4 NC_001798.1 + 150192 0.69 0.664829
Target:  5'- --cGcGGCGuGGggGGCGGcACCGGGGg- -3'
miRNA:   3'- gcaC-CUGC-UCuuCCGCC-UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 85811 0.69 0.661843
Target:  5'- cCGgGGGCGAugacgggggggggcGggGGCGGGCgGGGGc- -3'
miRNA:   3'- -GCaCCUGCU--------------CuuCCGCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 122210 0.69 0.654867
Target:  5'- uCGcUGGuCGAGu-GGCuGGACCGcGGGUGg -3'
miRNA:   3'- -GC-ACCuGCUCuuCCG-CCUGGU-CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 39880 0.69 0.654867
Target:  5'- gGUGccGGCGuccucGGGGCGGGCCGGGGg- -3'
miRNA:   3'- gCAC--CUGCuc---UUCCGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 148274 0.69 0.644888
Target:  5'- aGgagGGGCGGGcguGGCGGGCaggugugcgggCGGGGUGg -3'
miRNA:   3'- gCa--CCUGCUCuu-CCGCCUG-----------GUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 144575 0.69 0.644888
Target:  5'- --aGGGCGAGGacGGGCGG-CU-GGGUGg -3'
miRNA:   3'- gcaCCUGCUCU--UCCGCCuGGuCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 15194 0.69 0.644888
Target:  5'- gGUGGGgGGGcuGGCGaGCCGGGGg- -3'
miRNA:   3'- gCACCUgCUCuuCCGCcUGGUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.