miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 64343 1.09 0.002003
Target:  5'- gCGUGGACGAGAAGGCGGACCAGGGUGg -3'
miRNA:   3'- -GCACCUGCUCUUCCGCCUGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 6526 0.78 0.23376
Target:  5'- aCGgggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6568 0.78 0.245064
Target:  5'- cCGgggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6610 0.78 0.245064
Target:  5'- cCGgggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6250 0.77 0.269031
Target:  5'- gCGggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa-CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 26938 0.76 0.294853
Target:  5'- --cGGGCGGGGucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU--UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 18229 0.76 0.308471
Target:  5'- gGUGGGCGGGAAgGGUGGAugguuuCCGGGGg- -3'
miRNA:   3'- gCACCUGCUCUU-CCGCCU------GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 148066 0.76 0.308471
Target:  5'- aGUGGugGcGGAAGGaaaCGGGCCGGGGg- -3'
miRNA:   3'- gCACCugC-UCUUCC---GCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 30945 0.76 0.308471
Target:  5'- gGUcGGGCG-GggGGCGGGCgGGGGUc -3'
miRNA:   3'- gCA-CCUGCuCuuCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26997 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26818 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26908 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26848 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 26967 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 6361 0.76 0.322564
Target:  5'- cCGgggGGACGGGccGGgGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 26878 0.76 0.322564
Target:  5'- --cGGGCGGGGgucGGGCGGGCgGGGGUc -3'
miRNA:   3'- gcaCCUGCUCU---UCCGCCUGgUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 102473 0.75 0.337132
Target:  5'- gGUGGGCGGGAGGaggcggguaguGCGGggacgggccggcGCCGGGGUGu -3'
miRNA:   3'- gCACCUGCUCUUC-----------CGCC------------UGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 15477 0.74 0.375614
Target:  5'- aCGUGGGCGGGggGGUcguggGGGCUGGuguGGUGg -3'
miRNA:   3'- -GCACCUGCUCuuCCG-----CCUGGUC---CCAC- -5'
5241 3' -58.4 NC_001798.1 + 6322 0.74 0.375614
Target:  5'- cCGgggGGACGggccGGggGGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGC----UCuuCC-GCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6283 0.74 0.375614
Target:  5'- cCGgggGGACGggccGGggGGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGC----UCuuCC-GCCUGGUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.