miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 4397 0.72 0.479237
Target:  5'- gGUGGugGuGucGGCGGggcGCCGGGGg- -3'
miRNA:   3'- gCACCugCuCuuCCGCC---UGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6250 0.77 0.269031
Target:  5'- gCGggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa-CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6283 0.74 0.375614
Target:  5'- cCGgggGGACGggccGGggGGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGC----UCuuCC-GCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6322 0.74 0.375614
Target:  5'- cCGgggGGACGggccGGggGGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGC----UCuuCC-GCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6361 0.76 0.322564
Target:  5'- cCGgggGGACGGGccGGgGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCCgCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6386 0.68 0.7141
Target:  5'- --nGGGCcGGggGGCcgggGGGCCGGGGg- -3'
miRNA:   3'- gcaCCUGcUCuuCCG----CCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6414 0.71 0.57517
Target:  5'- aCGgggGGACGGGGggacGGGgGGACgGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCU----UCCgCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6446 0.71 0.57517
Target:  5'- aCGgggGGACGGGGggacGGGgGGACgGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCU----UCCgCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6478 0.71 0.57517
Target:  5'- aCGgggGGACGGGGggacGGGgGGACgGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCU----UCCgCCUGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6526 0.78 0.23376
Target:  5'- aCGgggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6568 0.78 0.245064
Target:  5'- cCGgggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 6610 0.78 0.245064
Target:  5'- cCGgggGGACGGGggGaCGGGCCGGGGg- -3'
miRNA:   3'- -GCa--CCUGCUCuuCcGCCUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 10299 0.66 0.815126
Target:  5'- aCGgggGGACGAcgGggGGgGGGuuGGGGg- -3'
miRNA:   3'- -GCa--CCUGCU--CuuCCgCCUggUCCCac -5'
5241 3' -58.4 NC_001798.1 + 11658 0.67 0.779132
Target:  5'- cCGgGGGCGGGGgucgggucucgggGGGaGGACgGGGGUGu -3'
miRNA:   3'- -GCaCCUGCUCU-------------UCCgCCUGgUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 11705 0.67 0.761702
Target:  5'- cCGUGGAgGGGuGGGuCGGGaggcuCCGGGGg- -3'
miRNA:   3'- -GCACCUgCUCuUCC-GCCU-----GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 14989 0.68 0.74293
Target:  5'- -uUGGGCGGGggGGCGaGGCguguuGGGGg- -3'
miRNA:   3'- gcACCUGCUCuuCCGC-CUGg----UCCCac -5'
5241 3' -58.4 NC_001798.1 + 15194 0.69 0.644888
Target:  5'- gGUGGGgGGGcuGGCGaGCCGGGGg- -3'
miRNA:   3'- gCACCUgCUCuuCCGCcUGGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 15378 0.7 0.613924
Target:  5'- cCGUGGGCGcggcGGAGGCgcccaccGGAcCCGGGGUu -3'
miRNA:   3'- -GCACCUGCu---CUUCCG-------CCU-GGUCCCAc -5'
5241 3' -58.4 NC_001798.1 + 15477 0.74 0.375614
Target:  5'- aCGUGGGCGGGggGGUcguggGGGCUGGuguGGUGg -3'
miRNA:   3'- -GCACCUGCUCuuCCG-----CCUGGUC---CCAC- -5'
5241 3' -58.4 NC_001798.1 + 16228 0.67 0.797867
Target:  5'- uGUGGG-GGGgcGGUgGGGCCGGGGc- -3'
miRNA:   3'- gCACCUgCUCuuCCG-CCUGGUCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.