miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 3' -52.9 NC_001798.1 + 63416 1.11 0.004568
Target:  5'- uCGAUAUCCACCGCCUCCCGAAACAGCc -3'
miRNA:   3'- -GCUAUAGGUGGCGGAGGGCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 43627 0.83 0.268365
Target:  5'- ----uUCCACCGCCUCCCGAcccAGgGGCg -3'
miRNA:   3'- gcuauAGGUGGCGGAGGGCU---UUgUCG- -5'
5242 3' -52.9 NC_001798.1 + 77963 0.77 0.536663
Target:  5'- cCGccAUCCACCGCCUCggCUGGAgcGCGGCg -3'
miRNA:   3'- -GCuaUAGGUGGCGGAG--GGCUU--UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 72252 0.76 0.567037
Target:  5'- cCGcgGUCCAgcugccucccccCCaGCCUCCCGAGguggGCAGCa -3'
miRNA:   3'- -GCuaUAGGU------------GG-CGGAGGGCUU----UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 79979 0.75 0.6185
Target:  5'- ---cGUCCGCCGCCgggccCCCGggGguccCAGCg -3'
miRNA:   3'- gcuaUAGGUGGCGGa----GGGCuuU----GUCG- -5'
5242 3' -52.9 NC_001798.1 + 104327 0.75 0.628854
Target:  5'- gCGAUGgccUCCGCCGggacggCUCCCGGGAuCAGCa -3'
miRNA:   3'- -GCUAU---AGGUGGCg-----GAGGGCUUU-GUCG- -5'
5242 3' -52.9 NC_001798.1 + 57782 0.75 0.649563
Target:  5'- -----aCCACCGCCUCCCGcGGACAa- -3'
miRNA:   3'- gcuauaGGUGGCGGAGGGC-UUUGUcg -5'
5242 3' -52.9 NC_001798.1 + 9024 0.74 0.670215
Target:  5'- cCGAgacCCACCGCCcCCCGcAGcCAGCg -3'
miRNA:   3'- -GCUauaGGUGGCGGaGGGCuUU-GUCG- -5'
5242 3' -52.9 NC_001798.1 + 454 0.73 0.721129
Target:  5'- uGcgGUCCcgcgGCCGCCUCCCcc-GCGGCc -3'
miRNA:   3'- gCuaUAGG----UGGCGGAGGGcuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 44449 0.73 0.731115
Target:  5'- gCGAcGUCguCCGCUcgCUCGAAGCGGCa -3'
miRNA:   3'- -GCUaUAGguGGCGGa-GGGCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 75192 0.73 0.741013
Target:  5'- gGGggcCCGCCGCCcCCCGGAGCcccccGGCg -3'
miRNA:   3'- gCUauaGGUGGCGGaGGGCUUUG-----UCG- -5'
5242 3' -52.9 NC_001798.1 + 77682 0.73 0.741013
Target:  5'- aGAUGgcggcCCAgCGCg-CCCGggGCAGCa -3'
miRNA:   3'- gCUAUa----GGUgGCGgaGGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 114350 0.73 0.741013
Target:  5'- uCGAgGUCCACCaGCCccucaucgCCCGcGACGGCc -3'
miRNA:   3'- -GCUaUAGGUGG-CGGa-------GGGCuUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 126327 0.73 0.750813
Target:  5'- cCGGgucCCGCCGCCgauccagcuUCCgGGAGCGGCu -3'
miRNA:   3'- -GCUauaGGUGGCGG---------AGGgCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 21692 0.73 0.760507
Target:  5'- gCGAUGccgCCGCUGCCgUCCCGGucuccgccgcGCAGCc -3'
miRNA:   3'- -GCUAUa--GGUGGCGG-AGGGCUu---------UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 150174 0.72 0.815898
Target:  5'- gCGGg--CCGCCGCC-CCCuccgcggcguggGggGCGGCa -3'
miRNA:   3'- -GCUauaGGUGGCGGaGGG------------CuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 134787 0.71 0.824583
Target:  5'- aCGGUccaCGCCGCC-CCCGGAGCccuGGCc -3'
miRNA:   3'- -GCUAuagGUGGCGGaGGGCUUUG---UCG- -5'
5242 3' -52.9 NC_001798.1 + 125262 0.71 0.824583
Target:  5'- aCGGcGUCCuccgGCgCGCaCUCCCGAAACcGCa -3'
miRNA:   3'- -GCUaUAGG----UG-GCG-GAGGGCUUUGuCG- -5'
5242 3' -52.9 NC_001798.1 + 152535 0.71 0.841407
Target:  5'- gGGaAUCCcCC-CCUCUCGggGCGGCc -3'
miRNA:   3'- gCUaUAGGuGGcGGAGGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 1483 0.71 0.849531
Target:  5'- cCGGgcgCCAuggcgUCGCCcgcgCCCGAGGCGGCg -3'
miRNA:   3'- -GCUauaGGU-----GGCGGa---GGGCUUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.