miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 3' -52.9 NC_001798.1 + 454 0.73 0.721129
Target:  5'- uGcgGUCCcgcgGCCGCCUCCCcc-GCGGCc -3'
miRNA:   3'- gCuaUAGG----UGGCGGAGGGcuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 1167 0.68 0.943931
Target:  5'- gGcgGUCCccaccaccuccacGCCGCCgCCCGccGCGGCc -3'
miRNA:   3'- gCuaUAGG-------------UGGCGGaGGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 1337 0.66 0.982589
Target:  5'- -----cCCGCCGCggCCCGc-GCAGCu -3'
miRNA:   3'- gcuauaGGUGGCGgaGGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 1483 0.71 0.849531
Target:  5'- cCGGgcgCCAuggcgUCGCCcgcgCCCGAGGCGGCg -3'
miRNA:   3'- -GCUauaGGU-----GGCGGa---GGGCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 2198 0.68 0.940215
Target:  5'- ---cAUCCagGCCGCCgcgcggcgcagcgggCCCGAGgcgcGCAGCg -3'
miRNA:   3'- gcuaUAGG--UGGCGGa--------------GGGCUU----UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 3297 0.71 0.857452
Target:  5'- gCGAcg-CCGCCGCCgacggcaaCGggGCGGCg -3'
miRNA:   3'- -GCUauaGGUGGCGGagg-----GCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 3698 0.67 0.964066
Target:  5'- -----cCCAUCGCCUCCgCGuc-CGGCg -3'
miRNA:   3'- gcuauaGGUGGCGGAGG-GCuuuGUCG- -5'
5242 3' -52.9 NC_001798.1 + 4032 0.7 0.872663
Target:  5'- gCGGccggCCACCGCCgcgcgggCCCG--GCGGCg -3'
miRNA:   3'- -GCUaua-GGUGGCGGa------GGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 4131 0.66 0.982389
Target:  5'- cCGGgg--CGCCGCC-CCCGggGCccucgcgGGCa -3'
miRNA:   3'- -GCUauagGUGGCGGaGGGCuuUG-------UCG- -5'
5242 3' -52.9 NC_001798.1 + 5406 0.71 0.857452
Target:  5'- uGGUcgcgCCGCCGCCgcuccgCCCGc-GCGGCa -3'
miRNA:   3'- gCUAua--GGUGGCGGa-----GGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 7180 0.66 0.973196
Target:  5'- aCGGg--CCcCCGCa--CCGggGCGGCg -3'
miRNA:   3'- -GCUauaGGuGGCGgagGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 7781 0.68 0.93974
Target:  5'- aCGAc--CCACCGCC-CCCGcuGGCGGg -3'
miRNA:   3'- -GCUauaGGUGGCGGaGGGCu-UUGUCg -5'
5242 3' -52.9 NC_001798.1 + 9024 0.74 0.670215
Target:  5'- cCGAgacCCACCGCCcCCCGcAGcCAGCg -3'
miRNA:   3'- -GCUauaGGUGGCGGaGGGCuUU-GUCG- -5'
5242 3' -52.9 NC_001798.1 + 9754 0.66 0.975828
Target:  5'- -----aCCACCGCgUUCCGguACuGCg -3'
miRNA:   3'- gcuauaGGUGGCGgAGGGCuuUGuCG- -5'
5242 3' -52.9 NC_001798.1 + 17107 0.66 0.980516
Target:  5'- aCGAUuguUCC-CgGCCgCCCGcGAGCGGUa -3'
miRNA:   3'- -GCUAu--AGGuGgCGGaGGGC-UUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 21692 0.73 0.760507
Target:  5'- gCGAUGccgCCGCUGCCgUCCCGGucuccgccgcGCAGCc -3'
miRNA:   3'- -GCUAUa--GGUGGCGG-AGGGCUu---------UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 22934 0.7 0.864404
Target:  5'- aCGAcg-CCGCCGCCgaugCCgugccgaCGAGGCGGCc -3'
miRNA:   3'- -GCUauaGGUGGCGGa---GG-------GCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 23611 0.66 0.978265
Target:  5'- cCGAgc-CCGCC-CCggCCCGGAcccccGCGGCg -3'
miRNA:   3'- -GCUauaGGUGGcGGa-GGGCUU-----UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 23657 0.66 0.980516
Target:  5'- gGAg---CGCCGCCgggCCCGc-GCGGCg -3'
miRNA:   3'- gCUauagGUGGCGGa--GGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 24392 0.66 0.973196
Target:  5'- -----gCCGCCGCCgcCCCGuugccgucGGCGGCg -3'
miRNA:   3'- gcuauaGGUGGCGGa-GGGCu-------UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.