miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 140190 0.66 0.548748
Target:  5'- cGgGCCGCCUgcggcCGGuGCUggUGuGCGUGGggucgccgaCCCa -3'
miRNA:   3'- -CgCGGCGGA-----GCC-CGA--AC-CGCACC---------GGG- -5'
5242 5' -63.8 NC_001798.1 + 25089 0.66 0.548748
Target:  5'- gGCGCCGCC--GGGC--GGCGccccGcGCCCc -3'
miRNA:   3'- -CGCGGCGGagCCCGaaCCGCa---C-CGGG- -5'
5242 5' -63.8 NC_001798.1 + 122378 0.66 0.548748
Target:  5'- cGCGcCCGCCcccCGcGGCUguccuccgagcUGGCcacGGCCCu -3'
miRNA:   3'- -CGC-GGCGGa--GC-CCGA-----------ACCGca-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 134926 0.66 0.548748
Target:  5'- cCGCCGCCgagUCGGcGCgugaccUGGUGcggGGCgCCg -3'
miRNA:   3'- cGCGGCGG---AGCC-CGa-----ACCGCa--CCG-GG- -5'
5242 5' -63.8 NC_001798.1 + 44182 0.66 0.546861
Target:  5'- aCGCgCGCCUCGuGGUgcacgaacagcgUGGUGaGGCCg -3'
miRNA:   3'- cGCG-GCGGAGC-CCGa-----------ACCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 43064 0.66 0.546861
Target:  5'- -aGCCGCCggccgagcgcgcCGGGCUcgGGCGccGCCg -3'
miRNA:   3'- cgCGGCGGa-----------GCCCGAa-CCGCacCGGg -5'
5242 5' -63.8 NC_001798.1 + 3818 0.66 0.545919
Target:  5'- cGCGCCuccuccGCCUCGGGCgccccccagaggccgGGgCGgcugucGCCCa -3'
miRNA:   3'- -CGCGG------CGGAGCCCGaa-------------CC-GCac----CGGG- -5'
5242 5' -63.8 NC_001798.1 + 2387 0.67 0.542154
Target:  5'- gGCGCaguagGCCUCcagggcggcggccgaGGGCgccGGCGUguggcugGGCCCc -3'
miRNA:   3'- -CGCGg----CGGAG---------------CCCGaa-CCGCA-------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 121711 0.67 0.539336
Target:  5'- cCGCCGCCgcgaCGGa---GGCGgcGGCCCa -3'
miRNA:   3'- cGCGGCGGa---GCCcgaaCCGCa-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 24816 0.67 0.539336
Target:  5'- uGCGCCuGCg-CGGGgaccUGcGCGUGGCCg -3'
miRNA:   3'- -CGCGG-CGgaGCCCga--AC-CGCACCGGg -5'
5242 5' -63.8 NC_001798.1 + 23907 0.67 0.539336
Target:  5'- cGgGCCcgguucgagGCCUCGGGCgccccGGCGcccgugugGGCgCCg -3'
miRNA:   3'- -CgCGG---------CGGAGCCCGaa---CCGCa-------CCG-GG- -5'
5242 5' -63.8 NC_001798.1 + 146474 0.67 0.539336
Target:  5'- aGCGCCGCgggCUCcgGGGCcgGGCcG-GGCCg -3'
miRNA:   3'- -CGCGGCG---GAG--CCCGaaCCG-CaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 36400 0.67 0.538398
Target:  5'- gGCGCCGgggccccCCUgcCGGGCggGGCGguggGGCg- -3'
miRNA:   3'- -CGCGGC-------GGA--GCCCGaaCCGCa---CCGgg -5'
5242 5' -63.8 NC_001798.1 + 73967 0.67 0.529979
Target:  5'- cGCGCgGCCgCGGGCUccgGGCc--GCCg -3'
miRNA:   3'- -CGCGgCGGaGCCCGAa--CCGcacCGGg -5'
5242 5' -63.8 NC_001798.1 + 93785 0.67 0.529979
Target:  5'- aGCGCCGCC-CGGGg--GGCcauuggGGUCUc -3'
miRNA:   3'- -CGCGGCGGaGCCCgaaCCGca----CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 149251 0.67 0.529979
Target:  5'- gGCGUCGCCggCcGGCgcgGGCGc-GCCCu -3'
miRNA:   3'- -CGCGGCGGa-GcCCGaa-CCGCacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 81582 0.67 0.529979
Target:  5'- uGUcCCGCCUCaacaaaacacgGGGCgcgUGccCGUGGCCCc -3'
miRNA:   3'- -CGcGGCGGAG-----------CCCGa--ACc-GCACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 95523 0.67 0.520682
Target:  5'- cGCGCC-CUggagcgCGGGCaUGGCGagUGGUCg -3'
miRNA:   3'- -CGCGGcGGa-----GCCCGaACCGC--ACCGGg -5'
5242 5' -63.8 NC_001798.1 + 52975 0.67 0.520682
Target:  5'- gGCGCgCGaC-CGGGCUgGGC--GGCCCg -3'
miRNA:   3'- -CGCG-GCgGaGCCCGAaCCGcaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 24477 0.67 0.520682
Target:  5'- uCGCCGcCCUgGGGCgccUGaGCGccGcGCCCg -3'
miRNA:   3'- cGCGGC-GGAgCCCGa--AC-CGCa-C-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.