miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 85990 0.66 0.575356
Target:  5'- cCGCCGCCg-GGGCgcuggcgcaggGGgGUGaGCCg -3'
miRNA:   3'- cGCGGCGGagCCCGaa---------CCgCAC-CGGg -5'
5242 5' -63.8 NC_001798.1 + 10149 0.66 0.5744
Target:  5'- cCGUCGUCgUGGGCaaUGGCGUGGauggagacguucguCCCa -3'
miRNA:   3'- cGCGGCGGaGCCCGa-ACCGCACC--------------GGG- -5'
5242 5' -63.8 NC_001798.1 + 135206 0.66 0.56772
Target:  5'- -gGCCGCCcucgCGGGCcucGGgGaGGCCg -3'
miRNA:   3'- cgCGGCGGa---GCCCGaa-CCgCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 75830 0.66 0.56772
Target:  5'- -aGCCGCUucuccaUCGGaucaGGCGcUGGCCCa -3'
miRNA:   3'- cgCGGCGG------AGCCcgaaCCGC-ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 1975 0.66 0.56772
Target:  5'- aGCGCCGagaCgUCGGG---GGCGcGGUCCa -3'
miRNA:   3'- -CGCGGCg--G-AGCCCgaaCCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 78537 0.66 0.56772
Target:  5'- -gGCCaCCgagCGGGUcaUGGCG-GGCCUg -3'
miRNA:   3'- cgCGGcGGa--GCCCGa-ACCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 133205 0.66 0.558211
Target:  5'- aCGCCGCCggaGaGC-UGGagcuuGUGGCCCu -3'
miRNA:   3'- cGCGGCGGag-CcCGaACCg----CACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 17228 0.66 0.558211
Target:  5'- -gGCCGCCuuUCGGGgUcGcGCGgGGCCg -3'
miRNA:   3'- cgCGGCGG--AGCCCgAaC-CGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 21806 0.66 0.558211
Target:  5'- gGC-CCGCCUCgGGGCggagcccGCGggaugacgcgGGCCCc -3'
miRNA:   3'- -CGcGGCGGAG-CCCGaac----CGCa---------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 31851 0.66 0.558211
Target:  5'- gGUGCCGCCccccacgcCGcGGagggGGCGgcGGCCCg -3'
miRNA:   3'- -CGCGGCGGa-------GC-CCgaa-CCGCa-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 45083 0.66 0.558211
Target:  5'- cCGgCGCCUCGugaaGGCgc-GCGcccUGGCCCg -3'
miRNA:   3'- cGCgGCGGAGC----CCGaacCGC---ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 69159 0.66 0.558211
Target:  5'- cUGCCGgC-CGGGCggagcccgaUGGCG-GGCCa -3'
miRNA:   3'- cGCGGCgGaGCCCGa--------ACCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 96913 0.66 0.558211
Target:  5'- aCGCCGCC--GGGCUgucGGaCGccGCCCg -3'
miRNA:   3'- cGCGGCGGagCCCGAa--CC-GCacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 51411 0.66 0.558211
Target:  5'- cCGCCGCCgUCGcgcacgaugacGGCcccggGGCGcGGCCUu -3'
miRNA:   3'- cGCGGCGG-AGC-----------CCGaa---CCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 58686 0.66 0.558211
Target:  5'- cCGCCGCCgucaGGGCcgcGGCGgcgcgggGGUCg -3'
miRNA:   3'- cGCGGCGGag--CCCGaa-CCGCa------CCGGg -5'
5242 5' -63.8 NC_001798.1 + 2458 0.66 0.557263
Target:  5'- -aGCCGCCcugcgggUCGGGgccCUcGGCG-GGCCg -3'
miRNA:   3'- cgCGGCGG-------AGCCC---GAaCCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 81767 0.66 0.555367
Target:  5'- cGCGCgCGCCcCGGGCcuccgccccccccgaGGgGUGGCguCCg -3'
miRNA:   3'- -CGCG-GCGGaGCCCGaa-------------CCgCACCG--GG- -5'
5242 5' -63.8 NC_001798.1 + 122378 0.66 0.548748
Target:  5'- cGCGcCCGCCcccCGcGGCUguccuccgagcUGGCcacGGCCCu -3'
miRNA:   3'- -CGC-GGCGGa--GC-CCGA-----------ACCGca-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 25089 0.66 0.548748
Target:  5'- gGCGCCGCC--GGGC--GGCGccccGcGCCCc -3'
miRNA:   3'- -CGCGGCGGagCCCGaaCCGCa---C-CGGG- -5'
5242 5' -63.8 NC_001798.1 + 140190 0.66 0.548748
Target:  5'- cGgGCCGCCUgcggcCGGuGCUggUGuGCGUGGggucgccgaCCCa -3'
miRNA:   3'- -CgCGGCGGA-----GCC-CGA--AC-CGCACC---------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.