miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 93141 0.73 0.220928
Target:  5'- aGCGCCugGCCUCGGuGa-UGGCGggcgacgccgcccUGGCCCu -3'
miRNA:   3'- -CGCGG--CGGAGCC-CgaACCGC-------------ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 29305 0.73 0.237267
Target:  5'- cGCGCCGCCgggUGGGUg-GGCugaucGGCCCc -3'
miRNA:   3'- -CGCGGCGGa--GCCCGaaCCGca---CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 23659 0.73 0.237267
Target:  5'- aGCGCCGCC--GGGCccgcgcGGCGgUGGCCg -3'
miRNA:   3'- -CGCGGCGGagCCCGaa----CCGC-ACCGGg -5'
5242 5' -63.8 NC_001798.1 + 44293 0.73 0.237267
Target:  5'- cCGCUGCCgaugCGGGCgggGGCGUuguggacgauGGCCa -3'
miRNA:   3'- cGCGGCGGa---GCCCGaa-CCGCA----------CCGGg -5'
5242 5' -63.8 NC_001798.1 + 15271 0.72 0.25403
Target:  5'- gGCGgUGCCcCGGGUUccgGGCGUGGCg- -3'
miRNA:   3'- -CGCgGCGGaGCCCGAa--CCGCACCGgg -5'
5242 5' -63.8 NC_001798.1 + 37201 0.72 0.25403
Target:  5'- cGCGCCGaacgaCGGGCgcGGCGccggagcuuUGGCCCa -3'
miRNA:   3'- -CGCGGCgga--GCCCGaaCCGC---------ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 136853 0.72 0.25983
Target:  5'- aCGCCGacaCCUUgacgaacagcgaGGGCgUGGCGUGGCuCCg -3'
miRNA:   3'- cGCGGC---GGAG------------CCCGaACCGCACCG-GG- -5'
5242 5' -63.8 NC_001798.1 + 94991 0.72 0.265738
Target:  5'- gGCgGCCGCCU-GGGCcccgcagGGCGgcgcgGGCCUg -3'
miRNA:   3'- -CG-CGGCGGAgCCCGaa-----CCGCa----CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 67135 0.72 0.275415
Target:  5'- gGCGCCGCCccuggcaucgcgaCGGGCgcagcacuCGUGGCCCc -3'
miRNA:   3'- -CGCGGCGGa------------GCCCGaacc----GCACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 93305 0.72 0.277261
Target:  5'- cGCGCCgcggGCCUCguGGGCgccaUGGUGUucagcaccaauucGGCCCu -3'
miRNA:   3'- -CGCGG----CGGAG--CCCGa---ACCGCA-------------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 79501 0.72 0.277878
Target:  5'- uGCGCCGCCg-GGGCgaGGCGUaucuGcGCgCCg -3'
miRNA:   3'- -CGCGGCGGagCCCGaaCCGCA----C-CG-GG- -5'
5242 5' -63.8 NC_001798.1 + 91633 0.72 0.277878
Target:  5'- -gGCCGCC-CGGGUgagcgUgacgucaaagggGGCGUGGCCg -3'
miRNA:   3'- cgCGGCGGaGCCCGa----A------------CCGCACCGGg -5'
5242 5' -63.8 NC_001798.1 + 3752 0.72 0.277878
Target:  5'- uGCGCCGCgucgcccagCUCGGGCgcccacacgGGCGccgggGcGCCCg -3'
miRNA:   3'- -CGCGGCG---------GAGCCCGaa-------CCGCa----C-CGGG- -5'
5242 5' -63.8 NC_001798.1 + 77787 0.72 0.277878
Target:  5'- uGCGCCGCCUgCaGGCgcUGGCG-GGCa- -3'
miRNA:   3'- -CGCGGCGGA-GcCCGa-ACCGCaCCGgg -5'
5242 5' -63.8 NC_001798.1 + 29012 0.72 0.284742
Target:  5'- cGCGCCGCCgcgCGGGCccggacuccgccccGGCGaccGCCCc -3'
miRNA:   3'- -CGCGGCGGa--GCCCGaa------------CCGCac-CGGG- -5'
5242 5' -63.8 NC_001798.1 + 51686 0.71 0.290457
Target:  5'- aCGCUGCagcaGGGCgaGGCGcUGGCCUg -3'
miRNA:   3'- cGCGGCGgag-CCCGaaCCGC-ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 2005 0.71 0.290457
Target:  5'- uGC-CCGCC-CaGGCggccgUGGCG-GGCCCg -3'
miRNA:   3'- -CGcGGCGGaGcCCGa----ACCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 1296 0.71 0.290457
Target:  5'- cGCGUCGCCgUCGGGCUcGaGCagcGCCCg -3'
miRNA:   3'- -CGCGGCGG-AGCCCGAaC-CGcacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 22325 0.71 0.291098
Target:  5'- cCGCCGCCacggacgcggacgcgCGGGCgucggGGCGgGGCCg -3'
miRNA:   3'- cGCGGCGGa--------------GCCCGaa---CCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 154156 0.71 0.296912
Target:  5'- cGgGCgGCU--GGGCUcGGCGUaGGCCCg -3'
miRNA:   3'- -CgCGgCGGagCCCGAaCCGCA-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.