miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 5886 0.67 0.502286
Target:  5'- cGCGUCaucCCgCGGGCUccgccccgaGGCG-GGCCCg -3'
miRNA:   3'- -CGCGGc--GGaGCCCGAa--------CCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 8692 0.7 0.338694
Target:  5'- uGCGCCGCCgUCGGcGCcuuaggaccgacugcUGGC--GGCCCa -3'
miRNA:   3'- -CGCGGCGG-AGCC-CGa--------------ACCGcaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 9158 0.69 0.416006
Target:  5'- gGCGCCGCCcgcgccggggggcaGGGUcucUGGCG-GGUCCc -3'
miRNA:   3'- -CGCGGCGGag------------CCCGa--ACCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 9772 0.68 0.457626
Target:  5'- uGCGCCGC---GGuGCUgaUGGUcauGUGGCCCc -3'
miRNA:   3'- -CGCGGCGgagCC-CGA--ACCG---CACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 10149 0.66 0.5744
Target:  5'- cCGUCGUCgUGGGCaaUGGCGUGGauggagacguucguCCCa -3'
miRNA:   3'- cGCGGCGGaGCCCGa-ACCGCACC--------------GGG- -5'
5242 5' -63.8 NC_001798.1 + 11625 0.7 0.360005
Target:  5'- uCGCCGCUcgCGGGCgcgGGCGU--CCCu -3'
miRNA:   3'- cGCGGCGGa-GCCCGaa-CCGCAccGGG- -5'
5242 5' -63.8 NC_001798.1 + 12685 0.68 0.458499
Target:  5'- cGCGCCgaugaucagGCC-CGGGUUgcugggggcggcgggGGCGUGGUgCg -3'
miRNA:   3'- -CGCGG---------CGGaGCCCGAa--------------CCGCACCGgG- -5'
5242 5' -63.8 NC_001798.1 + 15271 0.72 0.25403
Target:  5'- gGCGgUGCCcCGGGUUccgGGCGUGGCg- -3'
miRNA:   3'- -CGCgGCGGaGCCCGAa--CCGCACCGgg -5'
5242 5' -63.8 NC_001798.1 + 15828 0.7 0.360005
Target:  5'- gGCGCCGCC-C-GGUUcGGgG-GGCCCg -3'
miRNA:   3'- -CGCGGCGGaGcCCGAaCCgCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 16219 0.76 0.140932
Target:  5'- cGCGCCGCCUgUGGGgg-GGCGguggggccggGGCCCu -3'
miRNA:   3'- -CGCGGCGGA-GCCCgaaCCGCa---------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 17228 0.66 0.558211
Target:  5'- -gGCCGCCuuUCGGGgUcGcGCGgGGCCg -3'
miRNA:   3'- cgCGGCGG--AGCCCgAaC-CGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 18208 0.66 0.582057
Target:  5'- cGCGCaGCCUCgccgggggacgguGGGCgggaagGGUGgaugguuuccgggGGCCCg -3'
miRNA:   3'- -CGCGgCGGAG-------------CCCGaa----CCGCa------------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 20286 0.68 0.457626
Target:  5'- uGCGCgGCCccaggCGGGUccGGCaGUaGCCCa -3'
miRNA:   3'- -CGCGgCGGa----GCCCGaaCCG-CAcCGGG- -5'
5242 5' -63.8 NC_001798.1 + 20356 0.69 0.423477
Target:  5'- gGCGCUGCCgggCGGGUUcggGGCGgcacgcaGGaUCCg -3'
miRNA:   3'- -CGCGGCGGa--GCCCGAa--CCGCa------CC-GGG- -5'
5242 5' -63.8 NC_001798.1 + 20945 0.67 0.502286
Target:  5'- gGCGUCGUgUUGaGGCg-GGCG-GGUCCg -3'
miRNA:   3'- -CGCGGCGgAGC-CCGaaCCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 21806 0.66 0.558211
Target:  5'- gGC-CCGCCUCgGGGCggagcccGCGggaugacgcgGGCCCc -3'
miRNA:   3'- -CGcGGCGGAG-CCCGaac----CGCa---------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 22325 0.71 0.291098
Target:  5'- cCGCCGCCacggacgcggacgcgCGGGCgucggGGCGgGGCCg -3'
miRNA:   3'- cGCGGCGGa--------------GCCCGaa---CCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 22878 0.71 0.296912
Target:  5'- cGCGCgGCC-CGGGUUcgggUGGCacgGUGGgCCg -3'
miRNA:   3'- -CGCGgCGGaGCCCGA----ACCG---CACCgGG- -5'
5242 5' -63.8 NC_001798.1 + 23010 0.66 0.577269
Target:  5'- gGCGUCGUCUCGccgcGGCagcUGGCccugcUGGCCUc -3'
miRNA:   3'- -CGCGGCGGAGC----CCGa--ACCGc----ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 23659 0.73 0.237267
Target:  5'- aGCGCCGCC--GGGCccgcgcGGCGgUGGCCg -3'
miRNA:   3'- -CGCGGCGGagCCCGaa----CCGC-ACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.