miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 1133 0.69 0.406985
Target:  5'- cGgGCucgCGCCUCGGc---GGCGUGGCCa -3'
miRNA:   3'- -CgCG---GCGGAGCCcgaaCCGCACCGGg -5'
5242 5' -63.8 NC_001798.1 + 1296 0.71 0.290457
Target:  5'- cGCGUCGCCgUCGGGCUcGaGCagcGCCCg -3'
miRNA:   3'- -CGCGGCGG-AGCCCGAaC-CGcacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 1475 0.68 0.457626
Target:  5'- cCGgCGCgC-CGGGCgccaUGGCGUcGCCCg -3'
miRNA:   3'- cGCgGCG-GaGCCCGa---ACCGCAcCGGG- -5'
5242 5' -63.8 NC_001798.1 + 1808 0.68 0.466392
Target:  5'- cGUGCUGCCgcgagaccaCGGGCccgucGGCG-GGCCa -3'
miRNA:   3'- -CGCGGCGGa--------GCCCGaa---CCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 1975 0.66 0.56772
Target:  5'- aGCGCCGagaCgUCGGG---GGCGcGGUCCa -3'
miRNA:   3'- -CGCGGCg--G-AGCCCgaaCCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 2005 0.71 0.290457
Target:  5'- uGC-CCGCC-CaGGCggccgUGGCG-GGCCCg -3'
miRNA:   3'- -CGcGGCGGaGcCCGa----ACCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 2204 0.7 0.345208
Target:  5'- -gGCCGCCgCGcGGCgcaGCG-GGCCCg -3'
miRNA:   3'- cgCGGCGGaGC-CCGaacCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 2258 0.74 0.197065
Target:  5'- cGCGCCGCCgggGGGCggGGCGgcgcagcgcgcGGCCa -3'
miRNA:   3'- -CGCGGCGGag-CCCGaaCCGCa----------CCGGg -5'
5242 5' -63.8 NC_001798.1 + 2387 0.67 0.542154
Target:  5'- gGCGCaguagGCCUCcagggcggcggccgaGGGCgccGGCGUguggcugGGCCCc -3'
miRNA:   3'- -CGCGg----CGGAG---------------CCCGaa-CCGCA-------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 2458 0.66 0.557263
Target:  5'- -aGCCGCCcugcgggUCGGGgccCUcGGCG-GGCCg -3'
miRNA:   3'- cgCGGCGG-------AGCCC---GAaCCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 2529 0.71 0.316943
Target:  5'- gGCGUCGgCg-GGGCggggGGCGcGGCCCc -3'
miRNA:   3'- -CGCGGCgGagCCCGaa--CCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 2618 0.71 0.310155
Target:  5'- gGCGCCGCCcggCGGcGCccuggccggGGCGgGGCUCu -3'
miRNA:   3'- -CGCGGCGGa--GCC-CGaa-------CCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 2969 0.69 0.423477
Target:  5'- cGCGUCGgCgUGcGGCggGGCGgccGGCCCg -3'
miRNA:   3'- -CGCGGCgGaGC-CCGaaCCGCa--CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 3353 0.69 0.423477
Target:  5'- uCGUCGCCgUCGuGGCgguUGGCGUcGCCg -3'
miRNA:   3'- cGCGGCGG-AGC-CCGa--ACCGCAcCGGg -5'
5242 5' -63.8 NC_001798.1 + 3752 0.72 0.277878
Target:  5'- uGCGCCGCgucgcccagCUCGGGCgcccacacgGGCGccgggGcGCCCg -3'
miRNA:   3'- -CGCGGCG---------GAGCCCGaa-------CCGCa----C-CGGG- -5'
5242 5' -63.8 NC_001798.1 + 3818 0.66 0.545919
Target:  5'- cGCGCCuccuccGCCUCGGGCgccccccagaggccgGGgCGgcugucGCCCa -3'
miRNA:   3'- -CGCGG------CGGAGCCCGaa-------------CC-GCac----CGGG- -5'
5242 5' -63.8 NC_001798.1 + 3885 0.69 0.423477
Target:  5'- cGCGCC-CCggGGGCggGGgGccGGCCCc -3'
miRNA:   3'- -CGCGGcGGagCCCGaaCCgCa-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 4043 0.71 0.303478
Target:  5'- cCGCCGCg-CGGGCccGGCGgcgcuccaggcGGCCCg -3'
miRNA:   3'- cGCGGCGgaGCCCGaaCCGCa----------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 4077 0.69 0.390901
Target:  5'- cGCgGUCGCCgcgggggucCGGGCcggGGCGggcucGGCCCu -3'
miRNA:   3'- -CG-CGGCGGa--------GCCCGaa-CCGCa----CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 4753 0.7 0.343027
Target:  5'- gGgGCCGCCUCGucggcaucggcaucGGCggcGGCGUcgucGGCCUc -3'
miRNA:   3'- -CgCGGCGGAGC--------------CCGaa-CCGCA----CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.