miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 63452 1.11 0.000421
Target:  5'- cGCGCCGCCUCGGGCUUGGCGUGGCCCc -3'
miRNA:   3'- -CGCGGCGGAGCCCGAACCGCACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 26206 0.83 0.051698
Target:  5'- cCGCCGCCUCGGGCgcgGGCGacgccaUGGCgCCc -3'
miRNA:   3'- cGCGGCGGAGCCCGaa-CCGC------ACCG-GG- -5'
5242 5' -63.8 NC_001798.1 + 75991 0.82 0.057263
Target:  5'- cCGCCGCCcCGGGCgccGGCGgcagGGCCCc -3'
miRNA:   3'- cGCGGCGGaGCCCGaa-CCGCa---CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 98621 0.79 0.085884
Target:  5'- cCG-CGCCUCGGGC--GGCGUGGCCg -3'
miRNA:   3'- cGCgGCGGAGCCCGaaCCGCACCGGg -5'
5242 5' -63.8 NC_001798.1 + 122003 0.79 0.092594
Target:  5'- gGCGUCGCCUCgGGGCUccgccagGGCGcccUGGUCCa -3'
miRNA:   3'- -CGCGGCGGAG-CCCGAa------CCGC---ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 153060 0.78 0.115824
Target:  5'- gGCGCCGCCcccuggggCGGGCggagcggcggGGCGgcgccgGGCCCu -3'
miRNA:   3'- -CGCGGCGGa-------GCCCGaa--------CCGCa-----CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 52385 0.77 0.12656
Target:  5'- cGCGCCGCCUgcucgccaccagCGGGCUgaacgccgugcugGGCGcGGCCg -3'
miRNA:   3'- -CGCGGCGGA------------GCCCGAa------------CCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 129350 0.76 0.140932
Target:  5'- aGCGcCCGCC--GGGCcUGGCGgGGCCCc -3'
miRNA:   3'- -CGC-GGCGGagCCCGaACCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 16219 0.76 0.140932
Target:  5'- cGCGCCGCCUgUGGGgg-GGCGguggggccggGGCCCu -3'
miRNA:   3'- -CGCGGCGGA-GCCCgaaCCGCa---------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 132141 0.76 0.147948
Target:  5'- uGCGCCGCCggGGGCcggcgGGCGgGGCgCCc -3'
miRNA:   3'- -CGCGGCGGagCCCGaa---CCGCaCCG-GG- -5'
5242 5' -63.8 NC_001798.1 + 151604 0.76 0.155279
Target:  5'- gGCGCUcgGCCgggggcCGGGCcgggGGCGUGGCCg -3'
miRNA:   3'- -CGCGG--CGGa-----GCCCGaa--CCGCACCGGg -5'
5242 5' -63.8 NC_001798.1 + 54798 0.75 0.166495
Target:  5'- aCGCCGCCaugcccgcgggcgUCGGGCUUGGCGccaccCCCg -3'
miRNA:   3'- cGCGGCGG-------------AGCCCGAACCGCacc--GGG- -5'
5242 5' -63.8 NC_001798.1 + 66756 0.75 0.170936
Target:  5'- aCGuCCGCCUgGGGUgcggcGGCGUGGgCCg -3'
miRNA:   3'- cGC-GGCGGAgCCCGaa---CCGCACCgGG- -5'
5242 5' -63.8 NC_001798.1 + 69503 0.75 0.18359
Target:  5'- gGCGCaggaCGCgC-CGGaGCggGGCGUGGCCCg -3'
miRNA:   3'- -CGCG----GCG-GaGCC-CGaaCCGCACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 53647 0.74 0.187989
Target:  5'- aCGCCGCCgcgguggCGGGgUUGcGCGacgcGGCCCa -3'
miRNA:   3'- cGCGGCGGa------GCCCgAAC-CGCa---CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 78817 0.74 0.197065
Target:  5'- aGCGCCGCC-CGcGGCgacGGCcccGGCCCc -3'
miRNA:   3'- -CGCGGCGGaGC-CCGaa-CCGca-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 37165 0.74 0.197065
Target:  5'- cGCGCCGCCUggCGGGCcgcucGGCGcgccaGGCgCCg -3'
miRNA:   3'- -CGCGGCGGA--GCCCGaa---CCGCa----CCG-GG- -5'
5242 5' -63.8 NC_001798.1 + 2258 0.74 0.197065
Target:  5'- cGCGCCGCCgggGGGCggGGCGgcgcagcgcgcGGCCa -3'
miRNA:   3'- -CGCGGCGGag-CCCGaaCCGCa----------CCGGg -5'
5242 5' -63.8 NC_001798.1 + 48153 0.74 0.201745
Target:  5'- uGCGCCGCggUCGGGCgccUGGCGgccacgcacGCCCg -3'
miRNA:   3'- -CGCGGCGg-AGCCCGa--ACCGCac-------CGGG- -5'
5242 5' -63.8 NC_001798.1 + 153294 0.74 0.211395
Target:  5'- cCGCCGUCUucgugggccCGGGCUcgGGCucgGGCCCg -3'
miRNA:   3'- cGCGGCGGA---------GCCCGAa-CCGca-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.