miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 154282 0.7 0.345208
Target:  5'- uGCGCaGCC-CGGGCcgUGuuGCG-GGCCCu -3'
miRNA:   3'- -CGCGgCGGaGCCCGa-AC--CGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 154156 0.71 0.296912
Target:  5'- cGgGCgGCU--GGGCUcGGCGUaGGCCCg -3'
miRNA:   3'- -CgCGgCGGagCCCGAaCCGCA-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 153332 0.69 0.41518
Target:  5'- -aGCUcggGCCUCGGGCUccaGGCacGGUCCg -3'
miRNA:   3'- cgCGG---CGGAGCCCGAa--CCGcaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 153294 0.74 0.211395
Target:  5'- cCGCCGUCUucgugggccCGGGCUcgGGCucgGGCCCg -3'
miRNA:   3'- cGCGGCGGA---------GCCCGAa-CCGca-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 153060 0.78 0.115824
Target:  5'- gGCGCCGCCcccuggggCGGGCggagcggcggGGCGgcgccgGGCCCu -3'
miRNA:   3'- -CGCGGCGGa-------GCCCGaa--------CCGCa-----CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 152080 0.67 0.493195
Target:  5'- cCGaCCGCUuaagCGGGCcgGGgGUcGGCCCc -3'
miRNA:   3'- cGC-GGCGGa---GCCCGaaCCgCA-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 151604 0.76 0.155279
Target:  5'- gGCGCUcgGCCgggggcCGGGCcgggGGCGUGGCCg -3'
miRNA:   3'- -CGCGG--CGGa-----GCCCGaa--CCGCACCGGg -5'
5242 5' -63.8 NC_001798.1 + 151284 0.68 0.466392
Target:  5'- -gGCCGCCUCGGcCUccacGCG-GGUCCg -3'
miRNA:   3'- cgCGGCGGAGCCcGAac--CGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 150360 0.67 0.51145
Target:  5'- cGCGuCCaCCggcacggCGGGC--GGCGcgGGCCCg -3'
miRNA:   3'- -CGC-GGcGGa------GCCCGaaCCGCa-CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 149985 0.68 0.48418
Target:  5'- cGCGgCGCCcgCGGacGCcggGGCGagcGGCCCg -3'
miRNA:   3'- -CGCgGCGGa-GCC--CGaa-CCGCa--CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 149663 0.67 0.51145
Target:  5'- gGCGCCgggucgcggGCCcCGGGCUcGGgGccGCCCu -3'
miRNA:   3'- -CGCGG---------CGGaGCCCGAaCCgCacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 149251 0.67 0.529979
Target:  5'- gGCGUCGCCggCcGGCgcgGGCGc-GCCCu -3'
miRNA:   3'- -CGCGGCGGa-GcCCGaa-CCGCacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 147171 0.68 0.431872
Target:  5'- -aGCCGCCcggcgcCGGGCggaaGGCGUcccccGCCCg -3'
miRNA:   3'- cgCGGCGGa-----GCCCGaa--CCGCAc----CGGG- -5'
5242 5' -63.8 NC_001798.1 + 146998 0.68 0.457626
Target:  5'- cCGCCucuuGCCUCGGGgacccccgGGCG-GGCCg -3'
miRNA:   3'- cGCGG----CGGAGCCCgaa-----CCGCaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 146624 0.68 0.454144
Target:  5'- cCGCCGCauuaggcccccgCGGGCauccGGCGgccGGCCCc -3'
miRNA:   3'- cGCGGCGga----------GCCCGaa--CCGCa--CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 146474 0.67 0.539336
Target:  5'- aGCGCCGCgggCUCcgGGGCcgGGCcG-GGCCg -3'
miRNA:   3'- -CGCGGCG---GAG--CCCGaaCCG-CaCCGGg -5'
5242 5' -63.8 NC_001798.1 + 141484 0.69 0.406985
Target:  5'- uCGCCGCgCgggGGGCUgaugucCGUGGCCCu -3'
miRNA:   3'- cGCGGCG-Gag-CCCGAacc---GCACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 140190 0.66 0.548748
Target:  5'- cGgGCCGCCUgcggcCGGuGCUggUGuGCGUGGggucgccgaCCCa -3'
miRNA:   3'- -CgCGGCGGA-----GCC-CGA--AC-CGCACC---------GGG- -5'
5242 5' -63.8 NC_001798.1 + 136853 0.72 0.25983
Target:  5'- aCGCCGacaCCUUgacgaacagcgaGGGCgUGGCGUGGCuCCg -3'
miRNA:   3'- cGCGGC---GGAG------------CCCGaACCGCACCG-GG- -5'
5242 5' -63.8 NC_001798.1 + 135206 0.66 0.56772
Target:  5'- -gGCCGCCcucgCGGGCcucGGgGaGGCCg -3'
miRNA:   3'- cgCGGCGGa---GCCCGaa-CCgCaCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.