miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 3' -56.7 NC_001798.1 + 28773 0.69 0.746714
Target:  5'- cGCGGAgGAGGAGGaggCGGcGGCGgcGGc -3'
miRNA:   3'- -UGCCUgCUCCUCCg--GUCaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 6615 0.69 0.727369
Target:  5'- -gGGACGGGGggacGGGCCGGgggGACGg--- -3'
miRNA:   3'- ugCCUGCUCC----UCCGGUCa--CUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 22764 0.69 0.7694
Target:  5'- gGCGGACGAGGAcgggggacgucuccgGGCCGc-GGCGgAGAc -3'
miRNA:   3'- -UGCCUGCUCCU---------------CCGGUcaCUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 79301 0.69 0.756242
Target:  5'- gGCGGugGAGGAGuuCCGG-GGCGcgcgGGAa -3'
miRNA:   3'- -UGCCugCUCCUCc-GGUCaCUGCa---UCU- -5'
5244 3' -56.7 NC_001798.1 + 153507 0.69 0.737086
Target:  5'- uGCGGGCGGGGAgacacgggGGUCGGaggGGCGUcAGGg -3'
miRNA:   3'- -UGCCUGCUCCU--------CCGGUCa--CUGCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 15613 0.69 0.756242
Target:  5'- cGCGGGCGGGGAGGCgAcUGcCGUu-- -3'
miRNA:   3'- -UGCCUGCUCCUCCGgUcACuGCAucu -5'
5244 3' -56.7 NC_001798.1 + 6290 0.69 0.746714
Target:  5'- gACGGGcCGGGGggacGGGCCGGgggGACGggccgGGGg -3'
miRNA:   3'- -UGCCU-GCUCC----UCCGGUCa--CUGCa----UCU- -5'
5244 3' -56.7 NC_001798.1 + 8855 0.69 0.756242
Target:  5'- gGCGGGCcGGGAGGUCAucgcgGACGcGGAa -3'
miRNA:   3'- -UGCCUGcUCCUCCGGUca---CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 6329 0.69 0.746714
Target:  5'- gACGGGcCGGGGggacGGGCCGGgggGACGggccgGGGg -3'
miRNA:   3'- -UGCCU-GCUCC----UCCGGUCa--CUGCa----UCU- -5'
5244 3' -56.7 NC_001798.1 + 129302 0.69 0.745755
Target:  5'- cGCGGGCgcgGAGGAGGgC-GUGACGUuccgccuGGAg -3'
miRNA:   3'- -UGCCUG---CUCCUCCgGuCACUGCA-------UCU- -5'
5244 3' -56.7 NC_001798.1 + 69499 0.69 0.737086
Target:  5'- gGCGGGCGcAGGAcGcGCCGGagcggGGCGUGGc -3'
miRNA:   3'- -UGCCUGC-UCCU-C-CGGUCa----CUGCAUCu -5'
5244 3' -56.7 NC_001798.1 + 97526 0.69 0.746714
Target:  5'- cGCGGAgGAgGGGGGgCGGaGGCGUGGc -3'
miRNA:   3'- -UGCCUgCU-CCUCCgGUCaCUGCAUCu -5'
5244 3' -56.7 NC_001798.1 + 26816 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26861 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26965 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 36426 0.68 0.784149
Target:  5'- gGCGGugGGGcGGGGUCGGggucgcGGCGgGGAa -3'
miRNA:   3'- -UGCCugCUC-CUCCGGUCa-----CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 149925 0.68 0.784149
Target:  5'- gGCGGAgGAGGAGGa-GGcGGCGgcGAc -3'
miRNA:   3'- -UGCCUgCUCCUCCggUCaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 4293 0.68 0.793195
Target:  5'- gGCGGAgGAGGAGGCgGagGACGccGAc -3'
miRNA:   3'- -UGCCUgCUCCUCCGgUcaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 97573 0.68 0.802099
Target:  5'- -aGGACGGGGAGcgcggccccgaGCCAGgGGCGcAGGg -3'
miRNA:   3'- ugCCUGCUCCUC-----------CGGUCaCUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 144575 0.68 0.819446
Target:  5'- -aGGGCGAGGAcgggcGGCUgGGUGGCGaGGGg -3'
miRNA:   3'- ugCCUGCUCCU-----CCGG-UCACUGCaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.