miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 3' -56.7 NC_001798.1 + 24576 0.67 0.867252
Target:  5'- gGCGcGCgGAGGcGGGCCGcGUGGcCGUGGAg -3'
miRNA:   3'- -UGCcUG-CUCC-UCCGGU-CACU-GCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 26816 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26861 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26903 0.67 0.867252
Target:  5'- uCGGGCGGgcGGGGGUCGGgcgGGCGgGGGn -3'
miRNA:   3'- uGCCUGCU--CCUCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26933 0.7 0.717572
Target:  5'- uCGGGCGGGcGGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- uGCCUGCUC-CUCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26965 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 27007 0.68 0.819446
Target:  5'- uCGGGCGGgcGGGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- uGCCUGCU--CCUCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 28773 0.69 0.746714
Target:  5'- cGCGGAgGAGGAGGaggCGGcGGCGgcGGc -3'
miRNA:   3'- -UGCCUgCUCCUCCg--GUCaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 30150 0.74 0.442738
Target:  5'- aGCGGGCG-GGGGGCCggGGUGAgGgagGGAc -3'
miRNA:   3'- -UGCCUGCuCCUCCGG--UCACUgCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 30957 0.68 0.774969
Target:  5'- gGCGGGCGGGGgucGGGCgGGggucgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC---UCCGgUCa----CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 36283 0.66 0.881596
Target:  5'- gGCGG-CGGGGGGG--GGUGcCGUGGGu -3'
miRNA:   3'- -UGCCuGCUCCUCCggUCACuGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 36426 0.68 0.784149
Target:  5'- gGCGGugGGGcGGGGUCGGggucgcGGCGgGGAa -3'
miRNA:   3'- -UGCCugCUC-CUCCGGUCa-----CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 38803 0.67 0.844197
Target:  5'- cGCGGuugGCGAGGcGGGCCAG-GAUGa--- -3'
miRNA:   3'- -UGCC---UGCUCC-UCCGGUCaCUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 39467 0.66 0.895072
Target:  5'- aGCGGA-GGGGGGGCCuggcgcGUGccuCGUGGc -3'
miRNA:   3'- -UGCCUgCUCCUCCGGu-----CACu--GCAUCu -5'
5244 3' -56.7 NC_001798.1 + 41107 0.72 0.5868
Target:  5'- aACGGAUagcucgcaGAGGAGGCgGGUGAuuuucgUGUAGGg -3'
miRNA:   3'- -UGCCUG--------CUCCUCCGgUCACU------GCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 50074 0.67 0.855178
Target:  5'- cCGGACGAcgaugacgcuccugcGGAGGCCgggcuGGUGGCGc--- -3'
miRNA:   3'- uGCCUGCU---------------CCUCCGG-----UCACUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 54726 0.68 0.810852
Target:  5'- uGCGGACcuGGGGGCCg--GACGcGGAg -3'
miRNA:   3'- -UGCCUGcuCCUCCGGucaCUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 55997 0.67 0.867252
Target:  5'- -gGGGCGAGG-GGCUGGUaGGCGg--- -3'
miRNA:   3'- ugCCUGCUCCuCCGGUCA-CUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 56180 0.7 0.707703
Target:  5'- gACGG-CGGGGGGGUgggguggGGUGugGUGGGu -3'
miRNA:   3'- -UGCCuGCUCCUCCGg------UCACugCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 57513 0.66 0.881596
Target:  5'- uGCGGGguUGGGGGGGCgugGGUGugGUucGGGg -3'
miRNA:   3'- -UGCCU--GCUCCUCCGg--UCACugCA--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.