miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 3' -56.7 NC_001798.1 + 2408 0.66 0.901474
Target:  5'- gGCGGcCGAGGGcgccGGCguGUGGC-UGGGc -3'
miRNA:   3'- -UGCCuGCUCCU----CCGguCACUGcAUCU- -5'
5244 3' -56.7 NC_001798.1 + 4293 0.68 0.793195
Target:  5'- gGCGGAgGAGGAGGCgGagGACGccGAc -3'
miRNA:   3'- -UGCCUgCUCCUCCGgUcaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 6245 0.73 0.507888
Target:  5'- gACGGGCGGGGgacggggggacGGGCCGGgggGACGggccgGGGg -3'
miRNA:   3'- -UGCCUGCUCC-----------UCCGGUCa--CUGCa----UCU- -5'
5244 3' -56.7 NC_001798.1 + 6290 0.69 0.746714
Target:  5'- gACGGGcCGGGGggacGGGCCGGgggGACGggccgGGGg -3'
miRNA:   3'- -UGCCU-GCUCC----UCCGGUCa--CUGCa----UCU- -5'
5244 3' -56.7 NC_001798.1 + 6329 0.69 0.746714
Target:  5'- gACGGGcCGGGGggacGGGCCGGgggGACGggccgGGGg -3'
miRNA:   3'- -UGCCU-GCUCC----UCCGGUCa--CUGCa----UCU- -5'
5244 3' -56.7 NC_001798.1 + 6368 0.67 0.836126
Target:  5'- gACGGGCcGGGGGGCCGGggGGCc---- -3'
miRNA:   3'- -UGCCUGcUCCUCCGGUCa-CUGcaucu -5'
5244 3' -56.7 NC_001798.1 + 6394 0.73 0.537044
Target:  5'- -gGGGCcGGGGGGCCGGgggGACGgggGGAc -3'
miRNA:   3'- ugCCUGcUCCUCCGGUCa--CUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 6531 0.74 0.488827
Target:  5'- -gGGACGGGGggacGGGCCGGgggGACGgggGGAc -3'
miRNA:   3'- ugCCUGCUCC----UCCGGUCa--CUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 6573 0.74 0.488827
Target:  5'- -gGGACGGGGggacGGGCCGGgggGACGgggGGAc -3'
miRNA:   3'- ugCCUGCUCC----UCCGGUCa--CUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 6615 0.69 0.727369
Target:  5'- -gGGACGGGGggacGGGCCGGgggGACGg--- -3'
miRNA:   3'- ugCCUGCUCC----UCCGGUCa--CUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 8855 0.69 0.756242
Target:  5'- gGCGGGCcGGGAGGUCAucgcgGACGcGGAa -3'
miRNA:   3'- -UGCCUGcUCCUCCGGUca---CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 9267 0.76 0.366407
Target:  5'- gACGGACGgauAGGAGGCCugggAGUGACGa--- -3'
miRNA:   3'- -UGCCUGC---UCCUCCGG----UCACUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 12264 0.8 0.204852
Target:  5'- cGCGGACGAccAGGCCGGUGGCGcAGAc -3'
miRNA:   3'- -UGCCUGCUccUCCGGUCACUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 14308 0.66 0.901474
Target:  5'- aACGGAUGAGuGGGG--GGUG-CGUGGGg -3'
miRNA:   3'- -UGCCUGCUC-CUCCggUCACuGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 14989 0.67 0.852079
Target:  5'- uUGGGCGGGGGGGCgAG--GCGUGu- -3'
miRNA:   3'- uGCCUGCUCCUCCGgUCacUGCAUcu -5'
5244 3' -56.7 NC_001798.1 + 15100 0.66 0.87453
Target:  5'- uCGGAa-GGcGAGGCCGGUGGCGc--- -3'
miRNA:   3'- uGCCUgcUC-CUCCGGUCACUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 15479 0.77 0.335516
Target:  5'- gUGGGCGGGGGGGUCgugggggcuGGUGugGUGGGg -3'
miRNA:   3'- uGCCUGCUCCUCCGG---------UCACugCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 15613 0.69 0.756242
Target:  5'- cGCGGGCGGGGAGGCgAcUGcCGUu-- -3'
miRNA:   3'- -UGCCUGCUCCUCCGgUcACuGCAucu -5'
5244 3' -56.7 NC_001798.1 + 15902 0.66 0.87453
Target:  5'- cGCGGGCGGGGuGGGaaGGgGGCGUacGGAc -3'
miRNA:   3'- -UGCCUGCUCC-UCCggUCaCUGCA--UCU- -5'
5244 3' -56.7 NC_001798.1 + 22764 0.69 0.7694
Target:  5'- gGCGGACGAGGAcgggggacgucuccgGGCCGc-GGCGgAGAc -3'
miRNA:   3'- -UGCCUGCUCCU---------------CCGGUcaCUGCaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.