miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 3' -56.7 NC_001798.1 + 61731 1.08 0.003116
Target:  5'- cACGGACGAGGAGGCCAGUGACGUAGAc -3'
miRNA:   3'- -UGCCUGCUCCUCCGGUCACUGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 12264 0.8 0.204852
Target:  5'- cGCGGACGAccAGGCCGGUGGCGcAGAc -3'
miRNA:   3'- -UGCCUGCUccUCCGGUCACUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 15479 0.77 0.335516
Target:  5'- gUGGGCGGGGGGGUCgugggggcuGGUGugGUGGGg -3'
miRNA:   3'- uGCCUGCUCCUCCGG---------UCACugCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 9267 0.76 0.366407
Target:  5'- gACGGACGgauAGGAGGCCugggAGUGACGa--- -3'
miRNA:   3'- -UGCCUGC---UCCUCCGG----UCACUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 69190 0.75 0.40769
Target:  5'- -aGGugGGGGAGGUCGGUGGgGUGc- -3'
miRNA:   3'- ugCCugCUCCUCCGGUCACUgCAUcu -5'
5244 3' -56.7 NC_001798.1 + 30150 0.74 0.442738
Target:  5'- aGCGGGCG-GGGGGCCggGGUGAgGgagGGAc -3'
miRNA:   3'- -UGCCUGCuCCUCCGG--UCACUgCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 148045 0.74 0.451763
Target:  5'- cGCGGGCGGGGGGGUggugguagUGGUGGCGgaaGGAa -3'
miRNA:   3'- -UGCCUGCUCCUCCG--------GUCACUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 6531 0.74 0.488827
Target:  5'- -gGGACGGGGggacGGGCCGGgggGACGgggGGAc -3'
miRNA:   3'- ugCCUGCUCC----UCCGGUCa--CUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 6573 0.74 0.488827
Target:  5'- -gGGACGGGGggacGGGCCGGgggGACGgggGGAc -3'
miRNA:   3'- ugCCUGCUCC----UCCGGUCa--CUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 6245 0.73 0.507888
Target:  5'- gACGGGCGGGGgacggggggacGGGCCGGgggGACGggccgGGGg -3'
miRNA:   3'- -UGCCUGCUCC-----------UCCGGUCa--CUGCa----UCU- -5'
5244 3' -56.7 NC_001798.1 + 134401 0.73 0.517536
Target:  5'- cUGGACGuGGAGGCCaaGGUcGACGUcGAc -3'
miRNA:   3'- uGCCUGCuCCUCCGG--UCA-CUGCAuCU- -5'
5244 3' -56.7 NC_001798.1 + 6394 0.73 0.537044
Target:  5'- -gGGGCcGGGGGGCCGGgggGACGgggGGAc -3'
miRNA:   3'- ugCCUGcUCCUCCGGUCa--CUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 65816 0.72 0.572753
Target:  5'- uGCGGGCGAGGAuggcgcucacguuGCCGGUGAUGgcccGGAg -3'
miRNA:   3'- -UGCCUGCUCCUc------------CGGUCACUGCa---UCU- -5'
5244 3' -56.7 NC_001798.1 + 41107 0.72 0.5868
Target:  5'- aACGGAUagcucgcaGAGGAGGCgGGUGAuuuucgUGUAGGg -3'
miRNA:   3'- -UGCCUG--------CUCCUCCGgUCACU------GCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 101342 0.72 0.596873
Target:  5'- -gGGGgGGGGGGGCguGUGAC-UAGAa -3'
miRNA:   3'- ugCCUgCUCCUCCGguCACUGcAUCU- -5'
5244 3' -56.7 NC_001798.1 + 146101 0.71 0.657591
Target:  5'- gGCGGGCGAaggaagGGGGGgUGGUGGCGgcGGc -3'
miRNA:   3'- -UGCCUGCU------CCUCCgGUCACUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 148408 0.7 0.687786
Target:  5'- uGCGGGCGGGGugGGcGCCGGggcgGGgGUGGGc -3'
miRNA:   3'- -UGCCUGCUCC--UC-CGGUCa---CUgCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 151609 0.7 0.697771
Target:  5'- uCGGcCGGGGgccGGGCCGGgGGCGUGGc -3'
miRNA:   3'- uGCCuGCUCC---UCCGGUCaCUGCAUCu -5'
5244 3' -56.7 NC_001798.1 + 56180 0.7 0.707703
Target:  5'- gACGG-CGGGGGGGUgggguggGGUGugGUGGGu -3'
miRNA:   3'- -UGCCuGCUCCUCCGg------UCACugCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 26933 0.7 0.717572
Target:  5'- uCGGGCGGGcGGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- uGCCUGCUC-CUCCGGUCa--CUGCaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.