miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 3' -56.7 NC_001798.1 + 153591 0.66 0.888445
Target:  5'- -gGGGCGucAGGGGGUCGGaggGGCGUcAGGg -3'
miRNA:   3'- ugCCUGC--UCCUCCGGUCa--CUGCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 153553 0.66 0.888445
Target:  5'- -gGGGCGucAGGGGGUCGGaggGGCGUcAGGg -3'
miRNA:   3'- ugCCUGC--UCCUCCGGUCa--CUGCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 153507 0.69 0.737086
Target:  5'- uGCGGGCGGGGAgacacgggGGUCGGaggGGCGUcAGGg -3'
miRNA:   3'- -UGCCUGCUCCU--------CCGGUCa--CUGCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 151609 0.7 0.697771
Target:  5'- uCGGcCGGGGgccGGGCCGGgGGCGUGGc -3'
miRNA:   3'- uGCCuGCUCC---UCCGGUCaCUGCAUCu -5'
5244 3' -56.7 NC_001798.1 + 150916 0.66 0.87453
Target:  5'- -gGGGCGcucuucGGGGGGCgGGcggGACGUAGu -3'
miRNA:   3'- ugCCUGC------UCCUCCGgUCa--CUGCAUCu -5'
5244 3' -56.7 NC_001798.1 + 149925 0.68 0.784149
Target:  5'- gGCGGAgGAGGAGGa-GGcGGCGgcGAc -3'
miRNA:   3'- -UGCCUgCUCCUCCggUCaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 148408 0.7 0.687786
Target:  5'- uGCGGGCGGGGugGGcGCCGGggcgGGgGUGGGc -3'
miRNA:   3'- -UGCCUGCUCC--UC-CGGUCa---CUgCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 148045 0.74 0.451763
Target:  5'- cGCGGGCGGGGGGGUggugguagUGGUGGCGgaaGGAa -3'
miRNA:   3'- -UGCCUGCUCCUCCG--------GUCACUGCa--UCU- -5'
5244 3' -56.7 NC_001798.1 + 146101 0.71 0.657591
Target:  5'- gGCGGGCGAaggaagGGGGGgUGGUGGCGgcGGc -3'
miRNA:   3'- -UGCCUGCU------CCUCCgGUCACUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 144575 0.68 0.819446
Target:  5'- -aGGGCGAGGAcgggcGGCUgGGUGGCGaGGGg -3'
miRNA:   3'- ugCCUGCUCCU-----CCGG-UCACUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 135215 0.66 0.888445
Target:  5'- cGCGGGCcucGGGGAGGCCGGgcUGcCGg--- -3'
miRNA:   3'- -UGCCUG---CUCCUCCGGUC--ACuGCaucu -5'
5244 3' -56.7 NC_001798.1 + 134401 0.73 0.517536
Target:  5'- cUGGACGuGGAGGCCaaGGUcGACGUcGAc -3'
miRNA:   3'- uGCCUGCuCCUCCGG--UCA-CUGCAuCU- -5'
5244 3' -56.7 NC_001798.1 + 129302 0.69 0.745755
Target:  5'- cGCGGGCgcgGAGGAGGgC-GUGACGUuccgccuGGAg -3'
miRNA:   3'- -UGCCUG---CUCCUCCgGuCACUGCA-------UCU- -5'
5244 3' -56.7 NC_001798.1 + 125654 0.67 0.827873
Target:  5'- cGCGGGCGAGGcgGGGgCGGcUGAgGUcAGGg -3'
miRNA:   3'- -UGCCUGCUCC--UCCgGUC-ACUgCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 112451 0.66 0.881596
Target:  5'- gGCGGACuugGGGGGGGgaaUAGUGGgGUGGu -3'
miRNA:   3'- -UGCCUG---CUCCUCCg--GUCACUgCAUCu -5'
5244 3' -56.7 NC_001798.1 + 111898 0.66 0.894419
Target:  5'- cCGGGgGAGGugcgccuGGGCCAGggcgaauACGUAGGg -3'
miRNA:   3'- uGCCUgCUCC-------UCCGGUCac-----UGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 111285 0.66 0.900844
Target:  5'- uCGGGCGcGGGAacguacaGGCC-GUGGCGcUGGAu -3'
miRNA:   3'- uGCCUGC-UCCU-------CCGGuCACUGC-AUCU- -5'
5244 3' -56.7 NC_001798.1 + 103092 0.67 0.859766
Target:  5'- aACGGAgCGAuGGccgcgucuAGGCUGGUGuCGUAGGu -3'
miRNA:   3'- -UGCCU-GCU-CC--------UCCGGUCACuGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 101965 0.66 0.901474
Target:  5'- cCGGAUaGAGGAGGCCccGGgggGGCGa--- -3'
miRNA:   3'- uGCCUG-CUCCUCCGG--UCa--CUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 101866 0.66 0.888445
Target:  5'- gGCGGAgGGGGguGGGCguGUG-CGggGGAg -3'
miRNA:   3'- -UGCCUgCUCC--UCCGguCACuGCa-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.