miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 3' -56.7 NC_001798.1 + 89684 0.67 0.859766
Target:  5'- cGCGGGCccGGAGGCgUAGUaGGCGgGGAu -3'
miRNA:   3'- -UGCCUGcuCCUCCG-GUCA-CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 103092 0.67 0.859766
Target:  5'- aACGGAgCGAuGGccgcgucuAGGCUGGUGuCGUAGGu -3'
miRNA:   3'- -UGCCU-GCU-CC--------UCCGGUCACuGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 50074 0.67 0.855178
Target:  5'- cCGGACGAcgaugacgcuccugcGGAGGCCgggcuGGUGGCGc--- -3'
miRNA:   3'- uGCCUGCU---------------CCUCCGG-----UCACUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 97646 0.67 0.852079
Target:  5'- cGCGGACGugcGGGAGcGCCGGcGGCuGUAc- -3'
miRNA:   3'- -UGCCUGC---UCCUC-CGGUCaCUG-CAUcu -5'
5244 3' -56.7 NC_001798.1 + 14989 0.67 0.852079
Target:  5'- uUGGGCGGGGGGGCgAG--GCGUGu- -3'
miRNA:   3'- uGCCUGCUCCUCCGgUCacUGCAUcu -5'
5244 3' -56.7 NC_001798.1 + 38803 0.67 0.844197
Target:  5'- cGCGGuugGCGAGGcGGGCCAG-GAUGa--- -3'
miRNA:   3'- -UGCC---UGCUCC-UCCGGUCaCUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 90077 0.67 0.836126
Target:  5'- -aGGACGAcGGGGGCCGGcaGGCcccUGGAg -3'
miRNA:   3'- ugCCUGCU-CCUCCGGUCa-CUGc--AUCU- -5'
5244 3' -56.7 NC_001798.1 + 6368 0.67 0.836126
Target:  5'- gACGGGCcGGGGGGCCGGggGGCc---- -3'
miRNA:   3'- -UGCCUGcUCCUCCGGUCa-CUGcaucu -5'
5244 3' -56.7 NC_001798.1 + 73648 0.67 0.836126
Target:  5'- gAUGGGCGGGGGGGUUcG-GGCGgcGGa -3'
miRNA:   3'- -UGCCUGCUCCUCCGGuCaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 125654 0.67 0.827873
Target:  5'- cGCGGGCGAGGcgGGGgCGGcUGAgGUcAGGg -3'
miRNA:   3'- -UGCCUGCUCC--UCCgGUC-ACUgCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 27007 0.68 0.819446
Target:  5'- uCGGGCGGgcGGGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- uGCCUGCU--CCUCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 144575 0.68 0.819446
Target:  5'- -aGGGCGAGGAcgggcGGCUgGGUGGCGaGGGg -3'
miRNA:   3'- ugCCUGCUCCU-----CCGG-UCACUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 54726 0.68 0.810852
Target:  5'- uGCGGACcuGGGGGCCg--GACGcGGAg -3'
miRNA:   3'- -UGCCUGcuCCUCCGGucaCUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 97573 0.68 0.802099
Target:  5'- -aGGACGGGGAGcgcggccccgaGCCAGgGGCGcAGGg -3'
miRNA:   3'- ugCCUGCUCCUC-----------CGGUCaCUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 4293 0.68 0.793195
Target:  5'- gGCGGAgGAGGAGGCgGagGACGccGAc -3'
miRNA:   3'- -UGCCUgCUCCUCCGgUcaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 36426 0.68 0.784149
Target:  5'- gGCGGugGGGcGGGGUCGGggucgcGGCGgGGAa -3'
miRNA:   3'- -UGCCugCUC-CUCCGGUCa-----CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 149925 0.68 0.784149
Target:  5'- gGCGGAgGAGGAGGa-GGcGGCGgcGAc -3'
miRNA:   3'- -UGCCUgCUCCUCCggUCaCUGCauCU- -5'
5244 3' -56.7 NC_001798.1 + 26965 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26861 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5'
5244 3' -56.7 NC_001798.1 + 26816 0.68 0.783237
Target:  5'- gGCGGGCGGGGgucgggcgggcggGGGUCGGgcgGGCGgGGGu -3'
miRNA:   3'- -UGCCUGCUCC-------------UCCGGUCa--CUGCaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.