Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5244 | 5' | -61.3 | NC_001798.1 | + | 137936 | 0.68 | 0.536031 |
Target: 5'- cUCCCCCGgccgcccggucCGCCGcgcgcugcucccGCUCCAGcGCCCc -3' miRNA: 3'- aAGGGGGUa----------GUGGC------------UGAGGUC-CGGGu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 103714 | 0.68 | 0.526385 |
Target: 5'- -gCCCgCCGUuguugcgugucCGCCGACgUCCGGGCCgGg -3' miRNA: 3'- aaGGG-GGUA-----------GUGGCUG-AGGUCCGGgU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 25672 | 0.68 | 0.516805 |
Target: 5'- -gCCCUgGgcaACCGGCUCUgcGGGCCCGc -3' miRNA: 3'- aaGGGGgUag-UGGCUGAGG--UCCGGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 109788 | 0.69 | 0.497862 |
Target: 5'- ---aCCCA-CGCCGAuCUCCGGGCCg- -3' miRNA: 3'- aaggGGGUaGUGGCU-GAGGUCCGGgu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 125368 | 0.69 | 0.497862 |
Target: 5'- -gCCCCCugaguugCGCCGGCaCCAGGCUa- -3' miRNA: 3'- aaGGGGGua-----GUGGCUGaGGUCCGGgu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 21304 | 0.69 | 0.488508 |
Target: 5'- -cCCCCCGUCcccCCGGCccCCcGGCCCc -3' miRNA: 3'- aaGGGGGUAGu--GGCUGa-GGuCCGGGu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 103059 | 0.69 | 0.479237 |
Target: 5'- -aCCCCCucgcgcGUCGCCGGgUCCAGGUg-- -3' miRNA: 3'- aaGGGGG------UAGUGGCUgAGGUCCGggu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 58894 | 0.69 | 0.470052 |
Target: 5'- -aCCCCCGgaggcgCGCCGGcCUCCccgAGGCuCCAc -3' miRNA: 3'- aaGGGGGUa-----GUGGCU-GAGG---UCCG-GGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 82253 | 0.69 | 0.470052 |
Target: 5'- -cCCCCCGcCuuUGGCcCCAGGCCCGg -3' miRNA: 3'- aaGGGGGUaGugGCUGaGGUCCGGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 65001 | 0.69 | 0.451959 |
Target: 5'- aUCCaggCCCAUCuugaggcacGCCGugUgCAGGCCCu -3' miRNA: 3'- aAGG---GGGUAG---------UGGCugAgGUCCGGGu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 75043 | 0.69 | 0.443056 |
Target: 5'- -gCCCCCGUCGCCG-C-CgAGGUCCc -3' miRNA: 3'- aaGGGGGUAGUGGCuGaGgUCCGGGu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 82837 | 0.69 | 0.443056 |
Target: 5'- -gCCCCC--CGCCGACgaaCCAcccGGCCCAu -3' miRNA: 3'- aaGGGGGuaGUGGCUGa--GGU---CCGGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 42713 | 0.69 | 0.443056 |
Target: 5'- -gUCCCCGUCGCCGuCgucgCCaccggccgaGGGCCCGu -3' miRNA: 3'- aaGGGGGUAGUGGCuGa---GG---------UCCGGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 31712 | 0.69 | 0.443056 |
Target: 5'- -gCCCCgGUCGCgcaUGAC-CCAGGCUCAg -3' miRNA: 3'- aaGGGGgUAGUG---GCUGaGGUCCGGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 75214 | 0.69 | 0.442172 |
Target: 5'- -cCCCCCggCGCCGACcuggcgcagcuguUCgAGGUCCAc -3' miRNA: 3'- aaGGGGGuaGUGGCUG-------------AGgUCCGGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 50170 | 0.7 | 0.434253 |
Target: 5'- -gCCCCCAUUACCGACgUCAG-CCUg -3' miRNA: 3'- aaGGGGGUAGUGGCUGaGGUCcGGGu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 153430 | 0.7 | 0.422962 |
Target: 5'- -aCCCCCGUCgggccaggcgcgcgGCCGuCUcCCAGGCCa- -3' miRNA: 3'- aaGGGGGUAG--------------UGGCuGA-GGUCCGGgu -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 149578 | 0.7 | 0.420382 |
Target: 5'- gUCCCCCGUgACCGuCUuguucacguaaggcgCCAGGgCCAc -3' miRNA: 3'- aAGGGGGUAgUGGCuGA---------------GGUCCgGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 62259 | 0.7 | 0.408467 |
Target: 5'- --gCCCCga-GCCGAUcCCAGGCCCGc -3' miRNA: 3'- aagGGGGuagUGGCUGaGGUCCGGGU- -5' |
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5244 | 5' | -61.3 | NC_001798.1 | + | 81218 | 0.7 | 0.391816 |
Target: 5'- -gCCCCC-UCGCCGACgaggCAGGUCCc -3' miRNA: 3'- aaGGGGGuAGUGGCUGag--GUCCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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