miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 5' -61.3 NC_001798.1 + 79767 0.66 0.624908
Target:  5'- -aCCgUCGUgaACCGGCUCCAgcuGGCCCu -3'
miRNA:   3'- aaGGgGGUAg-UGGCUGAGGU---CCGGGu -5'
5244 5' -61.3 NC_001798.1 + 104746 0.66 0.624908
Target:  5'- -gCUCUCGUCGCCGAUUaCCGcGGCCa- -3'
miRNA:   3'- aaGGGGGUAGUGGCUGA-GGU-CCGGgu -5'
5244 5' -61.3 NC_001798.1 + 2174 0.66 0.624908
Target:  5'- gUCCUCCGggucgggCACCuGGCgcaUCCAGGCCg- -3'
miRNA:   3'- aAGGGGGUa------GUGG-CUG---AGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 55937 0.67 0.614922
Target:  5'- aUCgCUCCGaCGCCGA-UCCAGGCCaCGg -3'
miRNA:   3'- aAG-GGGGUaGUGGCUgAGGUCCGG-GU- -5'
5244 5' -61.3 NC_001798.1 + 87714 0.67 0.614922
Target:  5'- uUUCCUCCGccguagCGCCGGCccCCGccGGCCCGa -3'
miRNA:   3'- -AAGGGGGUa-----GUGGCUGa-GGU--CCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 51153 0.67 0.604949
Target:  5'- gUCaCCCCggGUC-CCGACgcgcgUCCgAGGCCCGg -3'
miRNA:   3'- aAG-GGGG--UAGuGGCUG-----AGG-UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 123385 0.67 0.594994
Target:  5'- gUCCCCa---GgCGACgCCAGGCCCc -3'
miRNA:   3'- aAGGGGguagUgGCUGaGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 62790 0.67 0.594994
Target:  5'- -gCCCCggaCAUCGCCGACcgguuUCUggcgcagcuguGGGCCCAc -3'
miRNA:   3'- aaGGGG---GUAGUGGCUG-----AGG-----------UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 21142 0.67 0.589034
Target:  5'- -cCCCCCGUCcccCCGGC-CCGuccccccguccccccGGCCCGu -3'
miRNA:   3'- aaGGGGGUAGu--GGCUGaGGU---------------CCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 21100 0.67 0.589034
Target:  5'- -cCCCCCGUCcccCCGGC-CCGuccccccguccccccGGCCCGu -3'
miRNA:   3'- aaGGGGGUAGu--GGCUGaGGU---------------CCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 127874 0.67 0.585066
Target:  5'- -gCCCCaCGUCACCGgggGCcCCGGGuuCCCAu -3'
miRNA:   3'- aaGGGG-GUAGUGGC---UGaGGUCC--GGGU- -5'
5244 5' -61.3 NC_001798.1 + 106729 0.67 0.585066
Target:  5'- gUCCUagCCAUCGCCagggGGcCUCCGGaGCCCGc -3'
miRNA:   3'- aAGGG--GGUAGUGG----CU-GAGGUC-CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 135764 0.67 0.585066
Target:  5'- aUCCUCCGgcgGCCGGCcgCC-GGCCCGc -3'
miRNA:   3'- aAGGGGGUag-UGGCUGa-GGuCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 51124 0.67 0.57517
Target:  5'- -gCCCCCG-CGCCGuCgCCgggAGGCCCGc -3'
miRNA:   3'- aaGGGGGUaGUGGCuGaGG---UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 98682 0.67 0.565313
Target:  5'- -cCCCCCGUC-CCGAg-CCccgcgaccaccaAGGCCCGg -3'
miRNA:   3'- aaGGGGGUAGuGGCUgaGG------------UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 69868 0.67 0.565313
Target:  5'- -cCCCCCA-CAcacacucccacCCGACagcacCCGGGCCCGa -3'
miRNA:   3'- aaGGGGGUaGU-----------GGCUGa----GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 32077 0.68 0.5555
Target:  5'- -gCCCCCGUCGgCGuCUCCgucgucccAGGCCgCGg -3'
miRNA:   3'- aaGGGGGUAGUgGCuGAGG--------UCCGG-GU- -5'
5244 5' -61.3 NC_001798.1 + 72146 0.68 0.545738
Target:  5'- -gCCaCCCGg-GCCGGCgUCGGGCCCAc -3'
miRNA:   3'- aaGG-GGGUagUGGCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 81355 0.68 0.545738
Target:  5'- -gCCCCCAcucuccUCACCGACgccaccaCCGGcgaGCCCGu -3'
miRNA:   3'- aaGGGGGU------AGUGGCUGa------GGUC---CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 69118 0.68 0.545738
Target:  5'- -gCCUCCAggaGCUGGCcCCAGGCCUc -3'
miRNA:   3'- aaGGGGGUag-UGGCUGaGGUCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.