miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 5' -61.3 NC_001798.1 + 82837 0.69 0.443056
Target:  5'- -gCCCCC--CGCCGACgaaCCAcccGGCCCAu -3'
miRNA:   3'- aaGGGGGuaGUGGCUGa--GGU---CCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 65001 0.69 0.451959
Target:  5'- aUCCaggCCCAUCuugaggcacGCCGugUgCAGGCCCu -3'
miRNA:   3'- aAGG---GGGUAG---------UGGCugAgGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 58894 0.69 0.470052
Target:  5'- -aCCCCCGgaggcgCGCCGGcCUCCccgAGGCuCCAc -3'
miRNA:   3'- aaGGGGGUa-----GUGGCU-GAGG---UCCG-GGU- -5'
5244 5' -61.3 NC_001798.1 + 82253 0.69 0.470052
Target:  5'- -cCCCCCGcCuuUGGCcCCAGGCCCGg -3'
miRNA:   3'- aaGGGGGUaGugGCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 103059 0.69 0.479237
Target:  5'- -aCCCCCucgcgcGUCGCCGGgUCCAGGUg-- -3'
miRNA:   3'- aaGGGGG------UAGUGGCUgAGGUCCGggu -5'
5244 5' -61.3 NC_001798.1 + 21304 0.69 0.488508
Target:  5'- -cCCCCCGUCcccCCGGCccCCcGGCCCc -3'
miRNA:   3'- aaGGGGGUAGu--GGCUGa-GGuCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 125368 0.69 0.497862
Target:  5'- -gCCCCCugaguugCGCCGGCaCCAGGCUa- -3'
miRNA:   3'- aaGGGGGua-----GUGGCUGaGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 109788 0.69 0.497862
Target:  5'- ---aCCCA-CGCCGAuCUCCGGGCCg- -3'
miRNA:   3'- aaggGGGUaGUGGCU-GAGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 25672 0.68 0.516805
Target:  5'- -gCCCUgGgcaACCGGCUCUgcGGGCCCGc -3'
miRNA:   3'- aaGGGGgUag-UGGCUGAGG--UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 103714 0.68 0.526385
Target:  5'- -gCCCgCCGUuguugcgugucCGCCGACgUCCGGGCCgGg -3'
miRNA:   3'- aaGGG-GGUA-----------GUGGCUG-AGGUCCGGgU- -5'
5244 5' -61.3 NC_001798.1 + 137936 0.68 0.536031
Target:  5'- cUCCCCCGgccgcccggucCGCCGcgcgcugcucccGCUCCAGcGCCCc -3'
miRNA:   3'- aAGGGGGUa----------GUGGC------------UGAGGUC-CGGGu -5'
5244 5' -61.3 NC_001798.1 + 69118 0.68 0.545738
Target:  5'- -gCCUCCAggaGCUGGCcCCAGGCCUc -3'
miRNA:   3'- aaGGGGGUag-UGGCUGaGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 81355 0.68 0.545738
Target:  5'- -gCCCCCAcucuccUCACCGACgccaccaCCGGcgaGCCCGu -3'
miRNA:   3'- aaGGGGGU------AGUGGCUGa------GGUC---CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 72146 0.68 0.545738
Target:  5'- -gCCaCCCGg-GCCGGCgUCGGGCCCAc -3'
miRNA:   3'- aaGG-GGGUagUGGCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 32077 0.68 0.5555
Target:  5'- -gCCCCCGUCGgCGuCUCCgucgucccAGGCCgCGg -3'
miRNA:   3'- aaGGGGGUAGUgGCuGAGG--------UCCGG-GU- -5'
5244 5' -61.3 NC_001798.1 + 98682 0.67 0.565313
Target:  5'- -cCCCCCGUC-CCGAg-CCccgcgaccaccaAGGCCCGg -3'
miRNA:   3'- aaGGGGGUAGuGGCUgaGG------------UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 69868 0.67 0.565313
Target:  5'- -cCCCCCA-CAcacacucccacCCGACagcacCCGGGCCCGa -3'
miRNA:   3'- aaGGGGGUaGU-----------GGCUGa----GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 51124 0.67 0.57517
Target:  5'- -gCCCCCG-CGCCGuCgCCgggAGGCCCGc -3'
miRNA:   3'- aaGGGGGUaGUGGCuGaGG---UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 127874 0.67 0.585066
Target:  5'- -gCCCCaCGUCACCGgggGCcCCGGGuuCCCAu -3'
miRNA:   3'- aaGGGG-GUAGUGGC---UGaGGUCC--GGGU- -5'
5244 5' -61.3 NC_001798.1 + 106729 0.67 0.585066
Target:  5'- gUCCUagCCAUCGCCagggGGcCUCCGGaGCCCGc -3'
miRNA:   3'- aAGGG--GGUAGUGG----CU-GAGGUC-CGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.