miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 5' -61.3 NC_001798.1 + 61772 1.06 0.001446
Target:  5'- cUUCCCCCAUCACCGACUCCAGGCCCAg -3'
miRNA:   3'- -AAGGGGGUAGUGGCUGAGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 86824 0.82 0.066184
Target:  5'- -gCCCCCGUCGcuCCGGCUCCcGGCCCGg -3'
miRNA:   3'- aaGGGGGUAGU--GGCUGAGGuCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 126292 0.74 0.228274
Target:  5'- cUCCCCCcgagacggCGCCGuCUCCGGaGCCCGc -3'
miRNA:   3'- aAGGGGGua------GUGGCuGAGGUC-CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 122875 0.73 0.275311
Target:  5'- aUCCCCgCccgcuUCGCCGACUCCGacGCCCAc -3'
miRNA:   3'- aAGGGG-Gu----AGUGGCUGAGGUc-CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 92140 0.72 0.315458
Target:  5'- cUCCCCCGUCugcccCCGGuCgucuugCCGGGCCCc -3'
miRNA:   3'- aAGGGGGUAGu----GGCU-Ga-----GGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 27854 0.72 0.337132
Target:  5'- cUCUCCCGccccgacgcgCuCCGGCUCCGGGCCUAc -3'
miRNA:   3'- aAGGGGGUa---------GuGGCUGAGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 68708 0.71 0.352174
Target:  5'- -cCCCCCAggCACagcuCGGCgUCCAGGUCCAc -3'
miRNA:   3'- aaGGGGGUa-GUG----GCUG-AGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 147196 0.71 0.359871
Target:  5'- gUCCCCCGcccggCGguCCGGC-CCGGGCCCc -3'
miRNA:   3'- aAGGGGGUa----GU--GGCUGaGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 31638 0.71 0.359871
Target:  5'- -gCCCCCGUggugucugcgagCGCgGACgcggCCGGGCCCGc -3'
miRNA:   3'- aaGGGGGUA------------GUGgCUGa---GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 45512 0.71 0.367685
Target:  5'- aUCCCCCGuUCGCC----CCGGGCCCGu -3'
miRNA:   3'- aAGGGGGU-AGUGGcugaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 112991 0.71 0.370843
Target:  5'- -cCCCCCAUC-CCugaagcuuggguccgGAC-CCGGGCCCGc -3'
miRNA:   3'- aaGGGGGUAGuGG---------------CUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 81218 0.7 0.391816
Target:  5'- -gCCCCC-UCGCCGACgaggCAGGUCCc -3'
miRNA:   3'- aaGGGGGuAGUGGCUGag--GUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 62259 0.7 0.408467
Target:  5'- --gCCCCga-GCCGAUcCCAGGCCCGc -3'
miRNA:   3'- aagGGGGuagUGGCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 149578 0.7 0.420382
Target:  5'- gUCCCCCGUgACCGuCUuguucacguaaggcgCCAGGgCCAc -3'
miRNA:   3'- aAGGGGGUAgUGGCuGA---------------GGUCCgGGU- -5'
5244 5' -61.3 NC_001798.1 + 153430 0.7 0.422962
Target:  5'- -aCCCCCGUCgggccaggcgcgcgGCCGuCUcCCAGGCCa- -3'
miRNA:   3'- aaGGGGGUAG--------------UGGCuGA-GGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 50170 0.7 0.434253
Target:  5'- -gCCCCCAUUACCGACgUCAG-CCUg -3'
miRNA:   3'- aaGGGGGUAGUGGCUGaGGUCcGGGu -5'
5244 5' -61.3 NC_001798.1 + 75214 0.69 0.442172
Target:  5'- -cCCCCCggCGCCGACcuggcgcagcuguUCgAGGUCCAc -3'
miRNA:   3'- aaGGGGGuaGUGGCUG-------------AGgUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 75043 0.69 0.443056
Target:  5'- -gCCCCCGUCGCCG-C-CgAGGUCCc -3'
miRNA:   3'- aaGGGGGUAGUGGCuGaGgUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 42713 0.69 0.443056
Target:  5'- -gUCCCCGUCGCCGuCgucgCCaccggccgaGGGCCCGu -3'
miRNA:   3'- aaGGGGGUAGUGGCuGa---GG---------UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 82837 0.69 0.443056
Target:  5'- -gCCCCC--CGCCGACgaaCCAcccGGCCCAu -3'
miRNA:   3'- aaGGGGGuaGUGGCUGa--GGU---CCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.