miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 5' -61.3 NC_001798.1 + 127 0.66 0.664829
Target:  5'- cUCCCCCGgaGCCGgccGCUCCcccgcGGGCgCCGc -3'
miRNA:   3'- aAGGGGGUagUGGC---UGAGG-----UCCG-GGU- -5'
5244 5' -61.3 NC_001798.1 + 1904 0.66 0.652873
Target:  5'- --gCCCCAggaacuccacggCGCCGGCgaaggCCAGGuCCCGc -3'
miRNA:   3'- aagGGGGUa-----------GUGGCUGa----GGUCC-GGGU- -5'
5244 5' -61.3 NC_001798.1 + 2174 0.66 0.624908
Target:  5'- gUCCUCCGggucgggCACCuGGCgcaUCCAGGCCg- -3'
miRNA:   3'- aAGGGGGUa------GUGG-CUG---AGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 21100 0.67 0.589034
Target:  5'- -cCCCCCGUCcccCCGGC-CCGuccccccguccccccGGCCCGu -3'
miRNA:   3'- aaGGGGGUAGu--GGCUGaGGU---------------CCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 21142 0.67 0.589034
Target:  5'- -cCCCCCGUCcccCCGGC-CCGuccccccguccccccGGCCCGu -3'
miRNA:   3'- aaGGGGGUAGu--GGCUGaGGU---------------CCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 21304 0.69 0.488508
Target:  5'- -cCCCCCGUCcccCCGGCccCCcGGCCCc -3'
miRNA:   3'- aaGGGGGUAGu--GGCUGa-GGuCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 25672 0.68 0.516805
Target:  5'- -gCCCUgGgcaACCGGCUCUgcGGGCCCGc -3'
miRNA:   3'- aaGGGGgUag-UGGCUGAGG--UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 27854 0.72 0.337132
Target:  5'- cUCUCCCGccccgacgcgCuCCGGCUCCGGGCCUAc -3'
miRNA:   3'- aAGGGGGUa---------GuGGCUGAGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 28809 0.66 0.644888
Target:  5'- gUCCUCCGcCGCCGcggGC-CCGGGCCg- -3'
miRNA:   3'- aAGGGGGUaGUGGC---UGaGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 31459 0.66 0.654867
Target:  5'- cUCCCCC---GCCGuCUCCgcgccgccccgcGGGCCCc -3'
miRNA:   3'- aAGGGGGuagUGGCuGAGG------------UCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 31638 0.71 0.359871
Target:  5'- -gCCCCCGUggugucugcgagCGCgGACgcggCCGGGCCCGc -3'
miRNA:   3'- aaGGGGGUA------------GUGgCUGa---GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 31712 0.69 0.443056
Target:  5'- -gCCCCgGUCGCgcaUGAC-CCAGGCUCAg -3'
miRNA:   3'- aaGGGGgUAGUG---GCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 32077 0.68 0.5555
Target:  5'- -gCCCCCGUCGgCGuCUCCgucgucccAGGCCgCGg -3'
miRNA:   3'- aaGGGGGUAGUgGCuGAGG--------UCCGG-GU- -5'
5244 5' -61.3 NC_001798.1 + 42713 0.69 0.443056
Target:  5'- -gUCCCCGUCGCCGuCgucgCCaccggccgaGGGCCCGu -3'
miRNA:   3'- aaGGGGGUAGUGGCuGa---GG---------UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 45512 0.71 0.367685
Target:  5'- aUCCCCCGuUCGCC----CCGGGCCCGu -3'
miRNA:   3'- aAGGGGGU-AGUGGcugaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 50170 0.7 0.434253
Target:  5'- -gCCCCCAUUACCGACgUCAG-CCUg -3'
miRNA:   3'- aaGGGGGUAGUGGCUGaGGUCcGGGu -5'
5244 5' -61.3 NC_001798.1 + 51124 0.67 0.57517
Target:  5'- -gCCCCCG-CGCCGuCgCCgggAGGCCCGc -3'
miRNA:   3'- aaGGGGGUaGUGGCuGaGG---UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 51153 0.67 0.604949
Target:  5'- gUCaCCCCggGUC-CCGACgcgcgUCCgAGGCCCGg -3'
miRNA:   3'- aAG-GGGG--UAGuGGCUG-----AGG-UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 55937 0.67 0.614922
Target:  5'- aUCgCUCCGaCGCCGA-UCCAGGCCaCGg -3'
miRNA:   3'- aAG-GGGGUaGUGGCUgAGGUCCGG-GU- -5'
5244 5' -61.3 NC_001798.1 + 58894 0.69 0.470052
Target:  5'- -aCCCCCGgaggcgCGCCGGcCUCCccgAGGCuCCAc -3'
miRNA:   3'- aaGGGGGUa-----GUGGCU-GAGG---UCCG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.