miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 5' -61.3 NC_001798.1 + 61444 0.66 0.654867
Target:  5'- -aCUCaCCAUCuggugaagcGCCGGggcCUCCGGGCCCc -3'
miRNA:   3'- aaGGG-GGUAG---------UGGCU---GAGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 61772 1.06 0.001446
Target:  5'- cUUCCCCCAUCACCGACUCCAGGCCCAg -3'
miRNA:   3'- -AAGGGGGUAGUGGCUGAGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 62259 0.7 0.408467
Target:  5'- --gCCCCga-GCCGAUcCCAGGCCCGc -3'
miRNA:   3'- aagGGGGuagUGGCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 62790 0.67 0.594994
Target:  5'- -gCCCCggaCAUCGCCGACcgguuUCUggcgcagcuguGGGCCCAc -3'
miRNA:   3'- aaGGGG---GUAGUGGCUG-----AGG-----------UCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 65001 0.69 0.451959
Target:  5'- aUCCaggCCCAUCuugaggcacGCCGugUgCAGGCCCu -3'
miRNA:   3'- aAGG---GGGUAG---------UGGCugAgGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 66262 0.66 0.664829
Target:  5'- -gCCUuuCCGUCAgcCCGAagUCCAGGUCCAc -3'
miRNA:   3'- aaGGG--GGUAGU--GGCUg-AGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 68708 0.71 0.352174
Target:  5'- -cCCCCCAggCACagcuCGGCgUCCAGGUCCAc -3'
miRNA:   3'- aaGGGGGUa-GUG----GCUG-AGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 69118 0.68 0.545738
Target:  5'- -gCCUCCAggaGCUGGCcCCAGGCCUc -3'
miRNA:   3'- aaGGGGGUag-UGGCUGaGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 69868 0.67 0.565313
Target:  5'- -cCCCCCA-CAcacacucccacCCGACagcacCCGGGCCCGa -3'
miRNA:   3'- aaGGGGGUaGU-----------GGCUGa----GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 72146 0.68 0.545738
Target:  5'- -gCCaCCCGg-GCCGGCgUCGGGCCCAc -3'
miRNA:   3'- aaGG-GGGUagUGGCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 74645 0.66 0.664829
Target:  5'- -cCCCCCGagGCCccccggggGGCcUCGGGCCCAc -3'
miRNA:   3'- aaGGGGGUagUGG--------CUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 75043 0.69 0.443056
Target:  5'- -gCCCCCGUCGCCG-C-CgAGGUCCc -3'
miRNA:   3'- aaGGGGGUAGUGGCuGaGgUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 75214 0.69 0.442172
Target:  5'- -cCCCCCggCGCCGACcuggcgcagcuguUCgAGGUCCAc -3'
miRNA:   3'- aaGGGGGuaGUGGCUG-------------AGgUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 77657 0.66 0.631901
Target:  5'- -gCCgCCGUCGCCGAC-CUGacggcgaagauggcGGCCCAg -3'
miRNA:   3'- aaGGgGGUAGUGGCUGaGGU--------------CCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 79767 0.66 0.624908
Target:  5'- -aCCgUCGUgaACCGGCUCCAgcuGGCCCu -3'
miRNA:   3'- aaGGgGGUAg-UGGCUGAGGU---CCGGGu -5'
5244 5' -61.3 NC_001798.1 + 81218 0.7 0.391816
Target:  5'- -gCCCCC-UCGCCGACgaggCAGGUCCc -3'
miRNA:   3'- aaGGGGGuAGUGGCUGag--GUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 81355 0.68 0.545738
Target:  5'- -gCCCCCAcucuccUCACCGACgccaccaCCGGcgaGCCCGu -3'
miRNA:   3'- aaGGGGGU------AGUGGCUGa------GGUC---CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 81829 0.66 0.674766
Target:  5'- gUCgCCCCGUCGCCGcUUCCGcGcGUCCu -3'
miRNA:   3'- aAG-GGGGUAGUGGCuGAGGU-C-CGGGu -5'
5244 5' -61.3 NC_001798.1 + 82253 0.69 0.470052
Target:  5'- -cCCCCCGcCuuUGGCcCCAGGCCCGg -3'
miRNA:   3'- aaGGGGGUaGugGCUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 82837 0.69 0.443056
Target:  5'- -gCCCCC--CGCCGACgaaCCAcccGGCCCAu -3'
miRNA:   3'- aaGGGGGuaGUGGCUGa--GGU---CCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.