miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 5' -61.3 NC_001798.1 + 154465 0.66 0.664829
Target:  5'- cUCCCCCGgaGCCGgccGCUCCcccgcGGGCgCCGc -3'
miRNA:   3'- aAGGGGGUagUGGC---UGAGG-----UCCG-GGU- -5'
5244 5' -61.3 NC_001798.1 + 153430 0.7 0.422962
Target:  5'- -aCCCCCGUCgggccaggcgcgcgGCCGuCUcCCAGGCCa- -3'
miRNA:   3'- aaGGGGGUAG--------------UGGCuGA-GGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 153212 0.66 0.644888
Target:  5'- --aCCCUAgacCGCcCGACggcCCGGGCCCGc -3'
miRNA:   3'- aagGGGGUa--GUG-GCUGa--GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 149578 0.7 0.420382
Target:  5'- gUCCCCCGUgACCGuCUuguucacguaaggcgCCAGGgCCAc -3'
miRNA:   3'- aAGGGGGUAgUGGCuGA---------------GGUCCgGGU- -5'
5244 5' -61.3 NC_001798.1 + 147288 0.66 0.644888
Target:  5'- cUUCUCCC-UCccggGCCGccccGCUcCCGGGCCCGa -3'
miRNA:   3'- -AAGGGGGuAG----UGGC----UGA-GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 147196 0.71 0.359871
Target:  5'- gUCCCCCGcccggCGguCCGGC-CCGGGCCCc -3'
miRNA:   3'- aAGGGGGUa----GU--GGCUGaGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 137936 0.68 0.536031
Target:  5'- cUCCCCCGgccgcccggucCGCCGcgcgcugcucccGCUCCAGcGCCCc -3'
miRNA:   3'- aAGGGGGUa----------GUGGC------------UGAGGUC-CGGGu -5'
5244 5' -61.3 NC_001798.1 + 135764 0.67 0.585066
Target:  5'- aUCCUCCGgcgGCCGGCcgCC-GGCCCGc -3'
miRNA:   3'- aAGGGGGUag-UGGCUGa-GGuCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 127874 0.67 0.585066
Target:  5'- -gCCCCaCGUCACCGgggGCcCCGGGuuCCCAu -3'
miRNA:   3'- aaGGGG-GUAGUGGC---UGaGGUCC--GGGU- -5'
5244 5' -61.3 NC_001798.1 + 126292 0.74 0.228274
Target:  5'- cUCCCCCcgagacggCGCCGuCUCCGGaGCCCGc -3'
miRNA:   3'- aAGGGGGua------GUGGCuGAGGUC-CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 126253 0.66 0.664829
Target:  5'- cUCCCUCAgcCGCCgGGCgUCCGGacGCCCAa -3'
miRNA:   3'- aAGGGGGUa-GUGG-CUG-AGGUC--CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 126198 0.66 0.644888
Target:  5'- -gCCCCCAaggugcaCACCGacGCUCCuucaAGGCCUg -3'
miRNA:   3'- aaGGGGGUa------GUGGC--UGAGG----UCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 125368 0.69 0.497862
Target:  5'- -gCCCCCugaguugCGCCGGCaCCAGGCUa- -3'
miRNA:   3'- aaGGGGGua-----GUGGCUGaGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 123385 0.67 0.594994
Target:  5'- gUCCCCa---GgCGACgCCAGGCCCc -3'
miRNA:   3'- aAGGGGguagUgGCUGaGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 122875 0.73 0.275311
Target:  5'- aUCCCCgCccgcuUCGCCGACUCCGacGCCCAc -3'
miRNA:   3'- aAGGGG-Gu----AGUGGCUGAGGUc-CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 115804 0.66 0.661843
Target:  5'- -gCCCCUggCGCUGugUCCGGuggcguuucgugacGCCCGg -3'
miRNA:   3'- aaGGGGGuaGUGGCugAGGUC--------------CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 112991 0.71 0.370843
Target:  5'- -cCCCCCAUC-CCugaagcuuggguccgGAC-CCGGGCCCGc -3'
miRNA:   3'- aaGGGGGUAGuGG---------------CUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 109788 0.69 0.497862
Target:  5'- ---aCCCA-CGCCGAuCUCCGGGCCg- -3'
miRNA:   3'- aaggGGGUaGUGGCU-GAGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 106729 0.67 0.585066
Target:  5'- gUCCUagCCAUCGCCagggGGcCUCCGGaGCCCGc -3'
miRNA:   3'- aAGGG--GGUAGUGG----CU-GAGGUC-CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 104746 0.66 0.624908
Target:  5'- -gCUCUCGUCGCCGAUUaCCGcGGCCa- -3'
miRNA:   3'- aaGGGGGUAGUGGCUGA-GGU-CCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.