miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 70432 0.67 0.595957
Target:  5'- gGGCUGCUGgUGCACcGcauGGCGGUGGcGCu -3'
miRNA:   3'- -UCGGUGAC-AUGUGuCc--CCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 150326 0.67 0.595957
Target:  5'- gAGCCuggGUcauGCGCGaccGGGGCGcGCGGuGCg -3'
miRNA:   3'- -UCGGugaCA---UGUGU---CCCCGC-CGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 11648 0.67 0.595957
Target:  5'- -cCCugUGUcCcCGGGGGCGG-GGGUc -3'
miRNA:   3'- ucGGugACAuGuGUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 64700 0.67 0.595957
Target:  5'- aAGCCcucGCUGacguccgagaucUGgGCcgAGGcGGCGGUGGGCa -3'
miRNA:   3'- -UCGG---UGAC------------AUgUG--UCC-CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 136587 0.67 0.595957
Target:  5'- aGGCCACacaGUcCguGCGGGGGaCGGgccCGGGCa -3'
miRNA:   3'- -UCGGUGa--CAuG--UGUCCCC-GCC---GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 58687 0.67 0.586101
Target:  5'- cGCCGCcGU---CAGGGccGCGGCGGcGCg -3'
miRNA:   3'- uCGGUGaCAuguGUCCC--CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 9661 0.67 0.586101
Target:  5'- gGGCCGCgcgcGgaggGCGCgggaugGGGGGCucucacgugcgGGCGGGUg -3'
miRNA:   3'- -UCGGUGa---Ca---UGUG------UCCCCG-----------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 5229 0.68 0.580202
Target:  5'- cGCCugGCUGauauaguccucgggGCGCGcGGGGCGGgGGGa -3'
miRNA:   3'- uCGG--UGACa-------------UGUGU-CCCCGCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 105556 0.68 0.577257
Target:  5'- cGCCugUGUucccaaacguccagcGCgucgaaaggguaguACGGGuccauguucgagGGCGGCGGGCg -3'
miRNA:   3'- uCGGugACA---------------UG--------------UGUCC------------CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 24700 0.68 0.576276
Target:  5'- cGCCGCgcccccGCGCccGGGGCccGCGGGCg -3'
miRNA:   3'- uCGGUGaca---UGUGu-CCCCGc-CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 9160 0.68 0.566489
Target:  5'- cGCCGCcc-GCGCcgGGGGGCagggucucuGGCGGGUc -3'
miRNA:   3'- uCGGUGacaUGUG--UCCCCG---------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 14341 0.68 0.566489
Target:  5'- cGGUCGCguuUGUuguaucggACGCGGGGcCGGUGGGUg -3'
miRNA:   3'- -UCGGUG---ACA--------UGUGUCCCcGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 44291 0.68 0.566489
Target:  5'- uGCCGCUGccgAUGC--GGGCGG-GGGCg -3'
miRNA:   3'- uCGGUGACa--UGUGucCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 47216 0.68 0.566489
Target:  5'- cGCC-CUGUugGgaAGGGGUGGgcgugucguUGGGCg -3'
miRNA:   3'- uCGGuGACAugUg-UCCCCGCC---------GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 56158 0.68 0.556744
Target:  5'- cGGCgGCUuauaACGCccGGGGGaCGGCGGGg -3'
miRNA:   3'- -UCGgUGAca--UGUG--UCCCC-GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 38791 0.68 0.556744
Target:  5'- cGCCGCgcucgACGCGGuuGGCgaGGCGGGCc -3'
miRNA:   3'- uCGGUGaca--UGUGUCc-CCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 95298 0.68 0.556744
Target:  5'- gGGUUugUGUGCGCGGcgucgagucucGGG-GGCGGGg -3'
miRNA:   3'- -UCGGugACAUGUGUC-----------CCCgCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 64144 0.68 0.556744
Target:  5'- gGGUCGgUGcuCGCGGGGGagaCGGCGGGa -3'
miRNA:   3'- -UCGGUgACauGUGUCCCC---GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 58986 0.68 0.556744
Target:  5'- cGGCCggGCga-ACGCGGGGGgGGCGcGGa -3'
miRNA:   3'- -UCGG--UGacaUGUGUCCCCgCCGC-CCg -5'
5245 3' -61.2 NC_001798.1 + 48509 0.68 0.556744
Target:  5'- -uUCGCUGUcaGCACgcguuuguggcgAGGGGCGGgagGGGCg -3'
miRNA:   3'- ucGGUGACA--UGUG------------UCCCCGCCg--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.