miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 2569 0.67 0.635564
Target:  5'- cGGCCGC--------GGGGCGGgGGGCg -3'
miRNA:   3'- -UCGGUGacauguguCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 152998 0.67 0.635564
Target:  5'- aAGCCG----GCGC-GGGGCGGUcgccgGGGCg -3'
miRNA:   3'- -UCGGUgacaUGUGuCCCCGCCG-----CCCG- -5'
5245 3' -61.2 NC_001798.1 + 36407 0.67 0.635564
Target:  5'- gGGCCcccCUGccGgGC-GGGGCGGUGGGg -3'
miRNA:   3'- -UCGGu--GACa-UgUGuCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 105187 0.67 0.635564
Target:  5'- -uCCGCg--GCgGCGGGGcccGCGGUGGGCg -3'
miRNA:   3'- ucGGUGacaUG-UGUCCC---CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 27509 0.67 0.625648
Target:  5'- aAGCC-----GCGCGGGGGCGcccGCGGGa -3'
miRNA:   3'- -UCGGugacaUGUGUCCCCGC---CGCCCg -5'
5245 3' -61.2 NC_001798.1 + 38186 0.67 0.625648
Target:  5'- gGGCCGCUGgucgaGCAGGaGGC-GCGGa- -3'
miRNA:   3'- -UCGGUGACaug--UGUCC-CCGcCGCCcg -5'
5245 3' -61.2 NC_001798.1 + 23993 0.67 0.615737
Target:  5'- cGGCUGCUGUACACGccggacgcGGaGGCGaUGGGg -3'
miRNA:   3'- -UCGGUGACAUGUGU--------CC-CCGCcGCCCg -5'
5245 3' -61.2 NC_001798.1 + 91284 0.67 0.615737
Target:  5'- uGCCGuCUGggugGCucccCGGGGGUuguGGgGGGCa -3'
miRNA:   3'- uCGGU-GACa---UGu---GUCCCCG---CCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 34975 0.67 0.615737
Target:  5'- cGGCCGCcgagGU--GCGGGGGCcccuccGGCcgGGGCg -3'
miRNA:   3'- -UCGGUGa---CAugUGUCCCCG------CCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 36493 0.67 0.615737
Target:  5'- cGCCgGCgcgACGCGGGcGGCcgGGCGGGg -3'
miRNA:   3'- uCGG-UGacaUGUGUCC-CCG--CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 134208 0.67 0.615737
Target:  5'- -cCCGCUGgagcccCugGGGGacccgacccuGUGGCGGGCg -3'
miRNA:   3'- ucGGUGACau----GugUCCC----------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 149170 0.67 0.612766
Target:  5'- cGGCCGgUGguccggugGGGGGCGGCuuccuucGGGCa -3'
miRNA:   3'- -UCGGUgACaugug---UCCCCGCCG-------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 78055 0.67 0.609796
Target:  5'- cGGCUGCUGcGCAUcgcggAGGGGcUccuggaaauggcccaGGCGGGCg -3'
miRNA:   3'- -UCGGUGACaUGUG-----UCCCC-G---------------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 85815 0.67 0.605838
Target:  5'- gGGCgAUgacgGggggGgGCGGGGGCGGgCGGGg -3'
miRNA:   3'- -UCGgUGa---Ca---UgUGUCCCCGCC-GCCCg -5'
5245 3' -61.2 NC_001798.1 + 8551 0.67 0.605838
Target:  5'- gGGUCGCg--GCG-AGGGGUGG-GGGCg -3'
miRNA:   3'- -UCGGUGacaUGUgUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 4037 0.67 0.605838
Target:  5'- cGGCCACcGccGCGCGGGccCGGCGGcGCu -3'
miRNA:   3'- -UCGGUGaCa-UGUGUCCccGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 91781 0.67 0.605838
Target:  5'- cGGCCACgcccccugccgaUG-ACGCGcGGGGCGuggggaccGUGGGCg -3'
miRNA:   3'- -UCGGUG------------ACaUGUGU-CCCCGC--------CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 52607 0.67 0.604849
Target:  5'- uGGCCGCguUugACGGcGGGUcgacggcccccgaGGUGGGCa -3'
miRNA:   3'- -UCGGUGacAugUGUC-CCCG-------------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 64700 0.67 0.595957
Target:  5'- aAGCCcucGCUGacguccgagaucUGgGCcgAGGcGGCGGUGGGCa -3'
miRNA:   3'- -UCGG---UGAC------------AUgUG--UCC-CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 11648 0.67 0.595957
Target:  5'- -cCCugUGUcCcCGGGGGCGG-GGGUc -3'
miRNA:   3'- ucGGugACAuGuGUCCCCGCCgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.