Results 21 - 40 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5245 | 3' | -61.2 | NC_001798.1 | + | 147220 | 0.66 | 0.684954 |
Target: 5'- gGGCCcccgGCgGaGCGCGGGGGCcccggGGCcccGGGCc -3' miRNA: 3'- -UCGG----UGaCaUGUGUCCCCG-----CCG---CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 91065 | 0.66 | 0.675126 |
Target: 5'- -cCCGCaGUACACcuuAGGGGCGcGCcggaGGCg -3' miRNA: 3'- ucGGUGaCAUGUG---UCCCCGC-CGc---CCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 21727 | 0.66 | 0.675126 |
Target: 5'- cAGCCGgUGUGCcCcuGGuGCGGCGG-Cg -3' miRNA: 3'- -UCGGUgACAUGuGucCC-CGCCGCCcG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 147170 | 0.66 | 0.675126 |
Target: 5'- uAGCCGCccgGCGCc-GGGCGGaaGGCg -3' miRNA: 3'- -UCGGUGacaUGUGucCCCGCCgcCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 153498 | 0.66 | 0.665266 |
Target: 5'- aAGCaCAcCUGcgggcggggagACACGGGGGuCGGagGGGCg -3' miRNA: 3'- -UCG-GU-GACa----------UGUGUCCCC-GCCg-CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 15331 | 0.66 | 0.665266 |
Target: 5'- gGGCCcCg--GCGCGGuaGCGGgGGGCg -3' miRNA: 3'- -UCGGuGacaUGUGUCccCGCCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 98906 | 0.66 | 0.665266 |
Target: 5'- cGCCGCUGcccgACGCgcccggAGGGGCagaacuacacGGaGGGCa -3' miRNA: 3'- uCGGUGACa---UGUG------UCCCCG----------CCgCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27213 | 0.66 | 0.665266 |
Target: 5'- aAGCCcccgggGCgggGCGCGGGGGaGGCGGccGCg -3' miRNA: 3'- -UCGG------UGacaUGUGUCCCCgCCGCC--CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 154082 | 0.66 | 0.665266 |
Target: 5'- cGGCacgGCUGgaGCGcCGGGGcGCGGCcGGCg -3' miRNA: 3'- -UCGg--UGACa-UGU-GUCCC-CGCCGcCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 77789 | 0.66 | 0.665266 |
Target: 5'- cGCCGCc---UGCAGGcGCuGGCGGGCa -3' miRNA: 3'- uCGGUGacauGUGUCCcCG-CCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 15860 | 0.66 | 0.664278 |
Target: 5'- gGGUCGacccccucgggguCUGUcCGCAGGGcGCGucgaaaccGCGGGCg -3' miRNA: 3'- -UCGGU-------------GACAuGUGUCCC-CGC--------CGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 125711 | 0.66 | 0.65538 |
Target: 5'- cGGgCGC---GCGCGGGGGCGGCGa-- -3' miRNA: 3'- -UCgGUGacaUGUGUCCCCGCCGCccg -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 3412 | 0.66 | 0.65538 |
Target: 5'- cGCCGC-GUucucgcgcGCcaGCAGGGGCgcguaGGCGcGGCg -3' miRNA: 3'- uCGGUGaCA--------UG--UGUCCCCG-----CCGC-CCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 1813 | 0.66 | 0.65538 |
Target: 5'- uGCCGCgagacCACGGGcccGuCGGCGGGCc -3' miRNA: 3'- uCGGUGacau-GUGUCCc--C-GCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 27537 | 0.66 | 0.645477 |
Target: 5'- cAGCCccGCgGcGCGCGGGGGgaggGGCGGcGCc -3' miRNA: 3'- -UCGG--UGaCaUGUGUCCCCg---CCGCC-CG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 42748 | 0.66 | 0.645477 |
Target: 5'- cGUCGCcc-GCACAGacGGGCGGCGcGCg -3' miRNA: 3'- uCGGUGacaUGUGUC--CCCGCCGCcCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 100347 | 0.66 | 0.645477 |
Target: 5'- gGGcCCGCUG-AUcgAGGGGCaGCuGGGCg -3' miRNA: 3'- -UC-GGUGACaUGugUCCCCGcCG-CCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 149388 | 0.66 | 0.645477 |
Target: 5'- -uCCACUccgACGCgGGGGGCGuCGGGUa -3' miRNA: 3'- ucGGUGAca-UGUG-UCCCCGCcGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 134267 | 0.66 | 0.645477 |
Target: 5'- cGGCC-CUGgaGCGcCAGacGGGcCGGUGGGCc -3' miRNA: 3'- -UCGGuGACa-UGU-GUC--CCC-GCCGCCCG- -5' |
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5245 | 3' | -61.2 | NC_001798.1 | + | 36407 | 0.67 | 0.635564 |
Target: 5'- gGGCCcccCUGccGgGC-GGGGCGGUGGGg -3' miRNA: 3'- -UCGGu--GACa-UgUGuCCCCGCCGCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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