miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 9661 0.67 0.586101
Target:  5'- gGGCCGCgcgcGgaggGCGCgggaugGGGGGCucucacgugcgGGCGGGUg -3'
miRNA:   3'- -UCGGUGa---Ca---UGUG------UCCCCG-----------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 9844 0.68 0.527826
Target:  5'- aGGCCGgcGUGCugGGGGGaGGCGuGCu -3'
miRNA:   3'- -UCGGUgaCAUGugUCCCCgCCGCcCG- -5'
5245 3' -61.2 NC_001798.1 + 11648 0.67 0.595957
Target:  5'- -cCCugUGUcCcCGGGGGCGG-GGGUc -3'
miRNA:   3'- ucGGugACAuGuGUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 12025 0.71 0.377842
Target:  5'- cGCCACg--GC---GGGGCGGCGGGg -3'
miRNA:   3'- uCGGUGacaUGuguCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 12698 0.7 0.444988
Target:  5'- aGGCCcggGuUGC-UGGGGGCGGCGGGg -3'
miRNA:   3'- -UCGGugaC-AUGuGUCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 14095 0.69 0.46821
Target:  5'- uAGCUGCUGUaccccgggcacccgACACAcaaucggggcgauGGGGUGG-GGGCa -3'
miRNA:   3'- -UCGGUGACA--------------UGUGU-------------CCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 14341 0.68 0.566489
Target:  5'- cGGUCGCguuUGUuguaucggACGCGGGGcCGGUGGGUg -3'
miRNA:   3'- -UCGGUG---ACA--------UGUGUCCCcGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 15331 0.66 0.665266
Target:  5'- gGGCCcCg--GCGCGGuaGCGGgGGGCg -3'
miRNA:   3'- -UCGGuGacaUGUGUCccCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 15462 0.68 0.527826
Target:  5'- gGGUCGCguggGUAgACGuGGGCGGgGGGg -3'
miRNA:   3'- -UCGGUGa---CAUgUGUcCCCGCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 15860 0.66 0.664278
Target:  5'- gGGUCGacccccucgggguCUGUcCGCAGGGcGCGucgaaaccGCGGGCg -3'
miRNA:   3'- -UCGGU-------------GACAuGUGUCCC-CGC--------CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 16049 0.79 0.131594
Target:  5'- aAGCgACgcgugGUAgguCGCuGGGGGCGGCGGGCg -3'
miRNA:   3'- -UCGgUGa----CAU---GUG-UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 16221 0.74 0.271478
Target:  5'- cGCCGcCUGU--GgGGGGGCGGUGGGg -3'
miRNA:   3'- uCGGU-GACAugUgUCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 18013 0.73 0.290656
Target:  5'- uGGCCGCUGgcuccggGCAgGGGGGCGGCc--- -3'
miRNA:   3'- -UCGGUGACa------UGUgUCCCCGCCGcccg -5'
5245 3' -61.2 NC_001798.1 + 18212 0.69 0.518308
Target:  5'- cAGCCuc---GC-CGGGGGaCGGUGGGCg -3'
miRNA:   3'- -UCGGugacaUGuGUCCCC-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 19767 0.7 0.453844
Target:  5'- uGGCCGCag-GgAUAGGGGCaggcGGCGGGg -3'
miRNA:   3'- -UCGGUGacaUgUGUCCCCG----CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 20170 0.72 0.362152
Target:  5'- gGGCaGCUcGcACACGGGcucGGCGGCGGGUu -3'
miRNA:   3'- -UCGgUGA-CaUGUGUCC---CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 21727 0.66 0.675126
Target:  5'- cAGCCGgUGUGCcCcuGGuGCGGCGG-Cg -3'
miRNA:   3'- -UCGGUgACAUGuGucCC-CGCCGCCcG- -5'
5245 3' -61.2 NC_001798.1 + 22287 0.7 0.462795
Target:  5'- uGCCGCgcggGCGgAGcGGCGGCGGcGCg -3'
miRNA:   3'- uCGGUGaca-UGUgUCcCCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 23702 0.7 0.444988
Target:  5'- gGGCCGCUu--CACGGccGGGCGGCcccGGCg -3'
miRNA:   3'- -UCGGUGAcauGUGUC--CCCGCCGc--CCG- -5'
5245 3' -61.2 NC_001798.1 + 23993 0.67 0.615737
Target:  5'- cGGCUGCUGUACACGccggacgcGGaGGCGaUGGGg -3'
miRNA:   3'- -UCGGUGACAUGUGU--------CC-CCGCcGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.