miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 150458 0.74 0.247508
Target:  5'- gGGCgACggccGCGCGGGGGCGcGCGGcGCg -3'
miRNA:   3'- -UCGgUGaca-UGUGUCCCCGC-CGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 96966 0.74 0.265316
Target:  5'- cAGgCGCUGgcgcggacCGCGGcGGGCGGCGGGg -3'
miRNA:   3'- -UCgGUGACau------GUGUC-CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 16221 0.74 0.271478
Target:  5'- cGCCGcCUGU--GgGGGGGCGGUGGGg -3'
miRNA:   3'- uCGGU-GACAugUgUCCCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 150392 0.73 0.288691
Target:  5'- cGGCCGC-GUccgcgcucgcagacAcCACGGGGGCGGCGGcgGCg -3'
miRNA:   3'- -UCGGUGaCA--------------U-GUGUCCCCGCCGCC--CG- -5'
5245 3' -61.2 NC_001798.1 + 2516 0.73 0.290656
Target:  5'- cGGCCGCggcgGcgGCGuCGgcGGGGCGGgGGGCg -3'
miRNA:   3'- -UCGGUGa---Ca-UGU-GU--CCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 18013 0.73 0.290656
Target:  5'- uGGCCGCUGgcuccggGCAgGGGGGCGGCc--- -3'
miRNA:   3'- -UCGGUGACa------UGUgUCCCCGCCGcccg -5'
5245 3' -61.2 NC_001798.1 + 36072 0.73 0.304021
Target:  5'- aGGCUGCgg-GCGCGGGGuaGGUGGGUg -3'
miRNA:   3'- -UCGGUGacaUGUGUCCCcgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150817 0.73 0.307435
Target:  5'- cGCCGCUGcugcugcuccgcgggGCGcCAGGGggcgccggucgggucGCGGCGGGCu -3'
miRNA:   3'- uCGGUGACa--------------UGU-GUCCC---------------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 95683 0.73 0.310878
Target:  5'- uGGCgGCg--GCgGCGGGGGCGGCcGGCg -3'
miRNA:   3'- -UCGgUGacaUG-UGUCCCCGCCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 148263 0.73 0.317853
Target:  5'- cAGCCAggGUAaGgAGGGGCgggcguGGCGGGCa -3'
miRNA:   3'- -UCGGUgaCAUgUgUCCCCG------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 154140 0.73 0.317853
Target:  5'- cGGCgGCgggACAUGGcGGGCGGCuGGGCu -3'
miRNA:   3'- -UCGgUGacaUGUGUC-CCCGCCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 31336 0.72 0.324945
Target:  5'- cGGCCgGCggggGgcgcGCGCAGGcGCGGCGGGUg -3'
miRNA:   3'- -UCGG-UGa---Ca---UGUGUCCcCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 148370 0.72 0.339479
Target:  5'- cAGCCAggGUGaGgAGGGGCgggcguGGCGGGCa -3'
miRNA:   3'- -UCGGUgaCAUgUgUCCCCG------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 97455 0.72 0.339479
Target:  5'- cGCCGCgUGcugGCGCggcuGGGGGcCGGCGGcGCg -3'
miRNA:   3'- uCGGUG-ACa--UGUG----UCCCC-GCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 3304 0.72 0.339479
Target:  5'- cGCCGCcGacgGCaACGGGgcggcggcGGCGGCGGGCu -3'
miRNA:   3'- uCGGUGaCa--UG-UGUCC--------CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 102550 0.72 0.346921
Target:  5'- aGGCCGCacgcgGUcaGCGGcGGGUGGCGGGg -3'
miRNA:   3'- -UCGGUGa----CAugUGUC-CCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 134975 0.72 0.354479
Target:  5'- uGCCGC-GUGCcUGGGGGCcuggcccgcGGUGGGCg -3'
miRNA:   3'- uCGGUGaCAUGuGUCCCCG---------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 20170 0.72 0.362152
Target:  5'- gGGCaGCUcGcACACGGGcucGGCGGCGGGUu -3'
miRNA:   3'- -UCGgUGA-CaUGUGUCC---CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 122801 0.72 0.362152
Target:  5'- uGGCCguGCUG-GCGCAucuGGGCGGCcaGGGCg -3'
miRNA:   3'- -UCGG--UGACaUGUGUc--CCCGCCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 12025 0.71 0.377842
Target:  5'- cGCCACg--GC---GGGGCGGCGGGg -3'
miRNA:   3'- uCGGUGacaUGuguCCCCGCCGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.