miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 61313 1.1 0.000756
Target:  5'- cAGCCACUGUACACAGGGGCGGCGGGCu -3'
miRNA:   3'- -UCGGUGACAUGUGUCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 31141 0.81 0.097064
Target:  5'- cGCCcCg--GCGCGGGGGCGGCGGuGCg -3'
miRNA:   3'- uCGGuGacaUGUGUCCCCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 103165 0.8 0.099579
Target:  5'- gGGCCAC-GUGCgcaaACAGGGuGCGGuCGGGCg -3'
miRNA:   3'- -UCGGUGaCAUG----UGUCCC-CGCC-GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26491 0.8 0.107499
Target:  5'- cGGCCGCgGgccGCGCGGGGacggugcuggccGCGGCGGGCg -3'
miRNA:   3'- -UCGGUGaCa--UGUGUCCC------------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 59669 0.79 0.116007
Target:  5'- gGGCgACUcGgcuCGCguGGGGGCGGCGGGCa -3'
miRNA:   3'- -UCGgUGA-Cau-GUG--UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 151760 0.79 0.124197
Target:  5'- gAGCCACUGcAUgucguugaGCAucccccaggcgugcGGGGCGGCGGGCu -3'
miRNA:   3'- -UCGGUGACaUG--------UGU--------------CCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 3001 0.79 0.128329
Target:  5'- gGGCCcCgg-GCGCGGGGGCgcGGCGGGCc -3'
miRNA:   3'- -UCGGuGacaUGUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 16049 0.79 0.131594
Target:  5'- aAGCgACgcgugGUAgguCGCuGGGGGCGGCGGGCg -3'
miRNA:   3'- -UCGgUGa----CAU---GUG-UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 132135 0.78 0.141853
Target:  5'- cGGCC-CUGcGCcgcCGGGGGcCGGCGGGCg -3'
miRNA:   3'- -UCGGuGACaUGu--GUCCCC-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 43465 0.78 0.152838
Target:  5'- -cCCGCaGUACGCGGGGGCGGgcgugaGGGCc -3'
miRNA:   3'- ucGGUGaCAUGUGUCCCCGCCg-----CCCG- -5'
5245 3' -61.2 NC_001798.1 + 3868 0.77 0.177148
Target:  5'- cAGcCCGCcGUACAgcacgcgcccCGGGGGCGGgGGGCc -3'
miRNA:   3'- -UC-GGUGaCAUGU----------GUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 27183 0.76 0.195212
Target:  5'- gGGCCGCgg-GCGCGGGGGgaggGGCGGGg -3'
miRNA:   3'- -UCGGUGacaUGUGUCCCCg---CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 65072 0.76 0.199973
Target:  5'- uGCCGCggGUGCACuGGGGCG-UGGGUu -3'
miRNA:   3'- uCGGUGa-CAUGUGuCCCCGCcGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 86245 0.76 0.204835
Target:  5'- uGGCCACcGUGCugaagcacggcCGGGGGC-GCGGGCg -3'
miRNA:   3'- -UCGGUGaCAUGu----------GUCCCCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 97228 0.76 0.204835
Target:  5'- uGGCCguggaGCUG-GCGCuguucGGGCGGCGGGCg -3'
miRNA:   3'- -UCGG-----UGACaUGUGuc---CCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 34095 0.75 0.225316
Target:  5'- gGGUgACcg-GCGCguGGGGGCGGUGGGCg -3'
miRNA:   3'- -UCGgUGacaUGUG--UCCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 110370 0.75 0.225316
Target:  5'- cAGCaGCUGgcC-CAGGGGCcgguGGCGGGCa -3'
miRNA:   3'- -UCGgUGACauGuGUCCCCG----CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 135229 0.75 0.236193
Target:  5'- aGGCCggGCUGccggaaGCcCGGGGGCgGGCGGGCc -3'
miRNA:   3'- -UCGG--UGACa-----UGuGUCCCCG-CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 88049 0.74 0.241795
Target:  5'- gGGCCGCUGgggGgGCGggcucguccccuGGGGCGGCGGcGUc -3'
miRNA:   3'- -UCGGUGACa--UgUGU------------CCCCGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 113304 0.74 0.241795
Target:  5'- aAGCCGCUGga-GCuGGuGGCcGCGGGCa -3'
miRNA:   3'- -UCGGUGACaugUGuCC-CCGcCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.