miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 59 0.69 0.508859
Target:  5'- gGGgCGCgaagGcGgGCGGcGGCGGCGGGCg -3'
miRNA:   3'- -UCgGUGa---CaUgUGUCcCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 1813 0.66 0.65538
Target:  5'- uGCCGCgagacCACGGGcccGuCGGCGGGCc -3'
miRNA:   3'- uCGGUGacau-GUGUCCc--C-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 2223 0.71 0.38505
Target:  5'- gGGCC-CgagGcGCGCAGcGGGCcgaaggcGGCGGGCg -3'
miRNA:   3'- -UCGGuGa--CaUGUGUC-CCCG-------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 2334 0.7 0.419014
Target:  5'- cGCCACg--GCGCGGGGaaGaGCGGGUg -3'
miRNA:   3'- uCGGUGacaUGUGUCCCcgC-CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 2371 0.68 0.535487
Target:  5'- cGGCCACggcccgcgggGCGCAGuaggccuccaGGGCGGCggccgaGGGCg -3'
miRNA:   3'- -UCGGUGaca-------UGUGUC----------CCCGCCG------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 2457 0.7 0.462795
Target:  5'- cAGCCGCccUGCGgGucGGGGCccucGGCGGGCc -3'
miRNA:   3'- -UCGGUGacAUGUgU--CCCCG----CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 2516 0.73 0.290656
Target:  5'- cGGCCGCggcgGcgGCGuCGgcGGGGCGGgGGGCg -3'
miRNA:   3'- -UCGGUGa---Ca-UGU-GU--CCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 2569 0.67 0.635564
Target:  5'- cGGCCGC--------GGGGCGGgGGGCg -3'
miRNA:   3'- -UCGGUGacauguguCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 3001 0.79 0.128329
Target:  5'- gGGCCcCgg-GCGCGGGGGCgcGGCGGGCc -3'
miRNA:   3'- -UCGGuGacaUGUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 3304 0.72 0.339479
Target:  5'- cGCCGCcGacgGCaACGGGgcggcggcGGCGGCGGGCu -3'
miRNA:   3'- uCGGUGaCa--UG-UGUCC--------CCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 3412 0.66 0.65538
Target:  5'- cGCCGC-GUucucgcgcGCcaGCAGGGGCgcguaGGCGcGGCg -3'
miRNA:   3'- uCGGUGaCA--------UG--UGUCCCCG-----CCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 3868 0.77 0.177148
Target:  5'- cAGcCCGCcGUACAgcacgcgcccCGGGGGCGGgGGGCc -3'
miRNA:   3'- -UC-GGUGaCAUGU----------GUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 4037 0.67 0.605838
Target:  5'- cGGCCACcGccGCGCGGGccCGGCGGcGCu -3'
miRNA:   3'- -UCGGUGaCa-UGUGUCCccGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 4072 0.71 0.385856
Target:  5'- cGGcCCGCgGUcgcCGCGGGGGUccgggccggGGCGGGCu -3'
miRNA:   3'- -UC-GGUGaCAu--GUGUCCCCG---------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 4214 0.71 0.410563
Target:  5'- cGgCGCUG---GCGGGGGC-GCGGGCg -3'
miRNA:   3'- uCgGUGACaugUGUCCCCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 5082 0.68 0.537408
Target:  5'- gGGCgGCaGUGgGgGGGGGUGGuuGGCa -3'
miRNA:   3'- -UCGgUGaCAUgUgUCCCCGCCgcCCG- -5'
5245 3' -61.2 NC_001798.1 + 5229 0.68 0.580202
Target:  5'- cGCCugGCUGauauaguccucgggGCGCGcGGGGCGGgGGGa -3'
miRNA:   3'- uCGG--UGACa-------------UGUGU-CCCCGCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 7182 0.66 0.694741
Target:  5'- gGGCC-Ccc-GCACcGGGGCGGCGaccaugauccGGCg -3'
miRNA:   3'- -UCGGuGacaUGUGuCCCCGCCGC----------CCG- -5'
5245 3' -61.2 NC_001798.1 + 8551 0.67 0.605838
Target:  5'- gGGUCGCg--GCG-AGGGGUGG-GGGCg -3'
miRNA:   3'- -UCGGUGacaUGUgUCCCCGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 9160 0.68 0.566489
Target:  5'- cGCCGCcc-GCGCcgGGGGGCagggucucuGGCGGGUc -3'
miRNA:   3'- uCGGUGacaUGUG--UCCCCG---------CCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.