miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 154397 0.69 0.508859
Target:  5'- gGGgCGCgaagGcGgGCGGcGGCGGCGGGCg -3'
miRNA:   3'- -UCgGUGa---CaUgUGUCcCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 154140 0.73 0.317853
Target:  5'- cGGCgGCgggACAUGGcGGGCGGCuGGGCu -3'
miRNA:   3'- -UCGgUGacaUGUGUC-CCCGCCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 154082 0.66 0.665266
Target:  5'- cGGCacgGCUGgaGCGcCGGGGcGCGGCcGGCg -3'
miRNA:   3'- -UCGg--UGACa-UGU-GUCCC-CGCCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 153773 0.71 0.383441
Target:  5'- gGGgCGCUGcggcccgcgcuccuUGCGCGGcGGCGGCGGGg -3'
miRNA:   3'- -UCgGUGAC--------------AUGUGUCcCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 153498 0.66 0.665266
Target:  5'- aAGCaCAcCUGcgggcggggagACACGGGGGuCGGagGGGCg -3'
miRNA:   3'- -UCG-GU-GACa----------UGUGUCCCC-GCCg-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 152998 0.67 0.635564
Target:  5'- aAGCCG----GCGC-GGGGCGGUcgccgGGGCg -3'
miRNA:   3'- -UCGGUgacaUGUGuCCCCGCCG-----CCCG- -5'
5245 3' -61.2 NC_001798.1 + 152505 0.69 0.490186
Target:  5'- uAGCCGCgc-GCcccgGCGGGGGCGGaGGGa -3'
miRNA:   3'- -UCGGUGacaUG----UGUCCCCGCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 151760 0.79 0.124197
Target:  5'- gAGCCACUGcAUgucguugaGCAucccccaggcgugcGGGGCGGCGGGCu -3'
miRNA:   3'- -UCGGUGACaUG--------UGU--------------CCCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 151163 0.7 0.419014
Target:  5'- uGCCg--GgcCACGGGGG-GGUGGGCg -3'
miRNA:   3'- uCGGugaCauGUGUCCCCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150901 0.71 0.377842
Target:  5'- cGCCGCccccGCGCcGGGGCgcucuucggggGGCGGGCg -3'
miRNA:   3'- uCGGUGaca-UGUGuCCCCG-----------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150817 0.73 0.307435
Target:  5'- cGCCGCUGcugcugcuccgcgggGCGcCAGGGggcgccggucgggucGCGGCGGGCu -3'
miRNA:   3'- uCGGUGACa--------------UGU-GUCCC---------------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150624 0.71 0.40139
Target:  5'- gGGCUcCUGggccGCGCGGGGcugucucGCGGgGGGCg -3'
miRNA:   3'- -UCGGuGACa---UGUGUCCC-------CGCCgCCCG- -5'
5245 3' -61.2 NC_001798.1 + 150458 0.74 0.247508
Target:  5'- gGGCgACggccGCGCGGGGGCGcGCGGcGCg -3'
miRNA:   3'- -UCGgUGaca-UGUGUCCCCGC-CGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 150392 0.73 0.288691
Target:  5'- cGGCCGC-GUccgcgcucgcagacAcCACGGGGGCGGCGGcgGCg -3'
miRNA:   3'- -UCGGUGaCA--------------U-GUGUCCCCGCCGCC--CG- -5'
5245 3' -61.2 NC_001798.1 + 150362 0.71 0.377842
Target:  5'- cGuCCACcg-GCACGGcGGGCGGCgcGGGCc -3'
miRNA:   3'- uC-GGUGacaUGUGUC-CCCGCCG--CCCG- -5'
5245 3' -61.2 NC_001798.1 + 150326 0.67 0.595957
Target:  5'- gAGCCuggGUcauGCGCGaccGGGGCGcGCGGuGCg -3'
miRNA:   3'- -UCGGugaCA---UGUGU---CCCCGC-CGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 149462 0.69 0.471838
Target:  5'- cGGCgGCUccACGCGGGGGCcGCGGcccGCa -3'
miRNA:   3'- -UCGgUGAcaUGUGUCCCCGcCGCC---CG- -5'
5245 3' -61.2 NC_001798.1 + 149388 0.66 0.645477
Target:  5'- -uCCACUccgACGCgGGGGGCGuCGGGUa -3'
miRNA:   3'- ucGGUGAca-UGUG-UCCCCGCcGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 149170 0.67 0.612766
Target:  5'- cGGCCGgUGguccggugGGGGGCGGCuuccuucGGGCa -3'
miRNA:   3'- -UCGGUgACaugug---UCCCCGCCG-------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 148419 0.66 0.684954
Target:  5'- uGGgCGCcg-GgGCGGGGGUGGgcaCGGGCg -3'
miRNA:   3'- -UCgGUGacaUgUGUCCCCGCC---GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.