miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 24150 0.69 0.471838
Target:  5'- -cCCACcugggGUACGCcauGGCGGCGGGCc -3'
miRNA:   3'- ucGGUGa----CAUGUGuccCCGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 24700 0.68 0.576276
Target:  5'- cGCCGCgcccccGCGCccGGGGCccGCGGGCg -3'
miRNA:   3'- uCGGUGaca---UGUGu-CCCCGc-CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 25595 0.69 0.490186
Target:  5'- uGGCCGCgGgcCGCGccGGgGGCGGGCc -3'
miRNA:   3'- -UCGGUGaCauGUGUccCCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26308 0.68 0.548016
Target:  5'- cGCCGCUGcggcccgucuacgugGCGCuGGGGCGcgacgccguGCGcGGCg -3'
miRNA:   3'- uCGGUGACa--------------UGUGuCCCCGC---------CGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 26357 0.66 0.684954
Target:  5'- cGGCCcgGCggagcUGCGCGGGccGCGGCGGGa -3'
miRNA:   3'- -UCGG--UGac---AUGUGUCCc-CGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 26491 0.8 0.107499
Target:  5'- cGGCCGCgGgccGCGCGGGGacggugcuggccGCGGCGGGCg -3'
miRNA:   3'- -UCGGUGaCa--UGUGUCCC------------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26810 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26840 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26870 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26900 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26944 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 26974 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 27004 0.68 0.547049
Target:  5'- gGGUCGg-GcGgGCGGGGGUcgGGCGGGCg -3'
miRNA:   3'- -UCGGUgaCaUgUGUCCCCG--CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 27183 0.76 0.195212
Target:  5'- gGGCCGCgg-GCGCGGGGGgaggGGCGGGg -3'
miRNA:   3'- -UCGGUGacaUGUGUCCCCg---CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 27213 0.66 0.665266
Target:  5'- aAGCCcccgggGCgggGCGCGGGGGaGGCGGccGCg -3'
miRNA:   3'- -UCGG------UGacaUGUGUCCCCgCCGCC--CG- -5'
5245 3' -61.2 NC_001798.1 + 27270 0.66 0.694741
Target:  5'- cAGCCcCgugGcGCGCGGGGG-GGagGGGCu -3'
miRNA:   3'- -UCGGuGa--CaUGUGUCCCCgCCg-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 27405 0.66 0.704478
Target:  5'- uGCgACUGgcgucuuCGGGGG-GGCGGGg -3'
miRNA:   3'- uCGgUGACaugu---GUCCCCgCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 27477 0.69 0.471838
Target:  5'- cGUC-CUGccGCGCGGGGGCGggcGCGGGa -3'
miRNA:   3'- uCGGuGACa-UGUGUCCCCGC---CGCCCg -5'
5245 3' -61.2 NC_001798.1 + 27509 0.67 0.625648
Target:  5'- aAGCC-----GCGCGGGGGCGcccGCGGGa -3'
miRNA:   3'- -UCGGugacaUGUGUCCCCGC---CGCCCg -5'
5245 3' -61.2 NC_001798.1 + 27537 0.66 0.645477
Target:  5'- cAGCCccGCgGcGCGCGGGGGgaggGGCGGcGCc -3'
miRNA:   3'- -UCGG--UGaCaUGUGUCCCCg---CCGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.