miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 97586 0.76 0.385433
Target:  5'- -cGGC--CCCGAGCCAGGGGCgcaGGg -3'
miRNA:   3'- caCCGauGGGCUCGGUUCCUGaugCC- -5'
5246 3' -56.1 NC_001798.1 + 101739 0.67 0.881944
Target:  5'- -cGGCgGCCCGGGCCGuguccacguucacguGGGccgcGCUGCuGGc -3'
miRNA:   3'- caCCGaUGGGCUCGGU---------------UCC----UGAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 102419 0.69 0.771023
Target:  5'- -cGGCgAUCUGGGCCuccaGGGGACUGgGGc -3'
miRNA:   3'- caCCGaUGGGCUCGG----UUCCUGAUgCC- -5'
5246 3' -56.1 NC_001798.1 + 106097 0.7 0.713045
Target:  5'- -cGGCgACCCGGcGCCGcgaccgccGGGuCUGCGGu -3'
miRNA:   3'- caCCGaUGGGCU-CGGU--------UCCuGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 107442 0.66 0.911692
Target:  5'- -cGGCgacCCCGcGCCccgaccccGAGGACggcGCGGg -3'
miRNA:   3'- caCCGau-GGGCuCGG--------UUCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 108302 0.66 0.892838
Target:  5'- uUGGCgccCCCGGGCgAAcucaaccuGACUACGGc -3'
miRNA:   3'- cACCGau-GGGCUCGgUUc-------CUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 108766 0.72 0.622046
Target:  5'- cUGGCUGgCC--GCCAGGGccuGCUACGGa -3'
miRNA:   3'- cACCGAUgGGcuCGGUUCC---UGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 109366 0.68 0.841149
Target:  5'- cUGGCcGCCCGGGgagCAGcGGGCUGCGcGg -3'
miRNA:   3'- cACCGaUGGGCUCg--GUU-CCUGAUGC-C- -5'
5246 3' -56.1 NC_001798.1 + 111582 0.68 0.807343
Target:  5'- --aGCUcCCUGAGCgGGGGGCccgGCGGg -3'
miRNA:   3'- cacCGAuGGGCUCGgUUCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 111632 0.67 0.87195
Target:  5'- -cGGCagACUCGcGUCGGGGGCgcucgGCGGg -3'
miRNA:   3'- caCCGa-UGGGCuCGGUUCCUGa----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 112414 0.66 0.919772
Target:  5'- gGUGGCauaGCUgagcuccauggccggCGAGCCAcggggcGGACUugGGg -3'
miRNA:   3'- -CACCGa--UGG---------------GCUCGGUu-----CCUGAugCC- -5'
5246 3' -56.1 NC_001798.1 + 122137 0.67 0.886097
Target:  5'- -gGGCc-CCCGGGCCGcGGGCga-GGa -3'
miRNA:   3'- caCCGauGGGCUCGGUuCCUGaugCC- -5'
5246 3' -56.1 NC_001798.1 + 124487 0.7 0.70309
Target:  5'- -aGGCUuccCCCccGCCAuggcggggggGGGGCUGCGGg -3'
miRNA:   3'- caCCGAu--GGGcuCGGU----------UCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 125452 0.7 0.722932
Target:  5'- cGUGGagcguCCCGAcGCCcGGGACcACGGu -3'
miRNA:   3'- -CACCgau--GGGCU-CGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 125772 0.7 0.693075
Target:  5'- uUGGCcGagacgcaccUCCGGGCCGAGGugUACaGGg -3'
miRNA:   3'- cACCGaU---------GGGCUCGGUUCCugAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 127611 0.7 0.722932
Target:  5'- gGUGucGCUgccGCCCGAGCUGAGGccGCUGCuGGu -3'
miRNA:   3'- -CAC--CGA---UGGGCUCGGUUCC--UGAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 132132 0.69 0.752092
Target:  5'- -aGGCgGCCCugcgccGCCGGGGGCcgGCGGg -3'
miRNA:   3'- caCCGaUGGGcu----CGGUUCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 135234 0.75 0.455341
Target:  5'- -gGGCUGCCgGaAGcCCGGGGGCggGCGGg -3'
miRNA:   3'- caCCGAUGGgC-UC-GGUUCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 138782 0.67 0.849148
Target:  5'- cGUGuGCUGCCUGAGaaacgcccCCAGGcGCUGCGu -3'
miRNA:   3'- -CAC-CGAUGGGCUC--------GGUUCcUGAUGCc -5'
5246 3' -56.1 NC_001798.1 + 142151 0.66 0.899353
Target:  5'- gGUGGUgcacgUGuuUGAGUCAGGGACgcgcGCGGu -3'
miRNA:   3'- -CACCG-----AUggGCUCGGUUCCUGa---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.