miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 31998 0.68 0.81605
Target:  5'- -cGGCgccGCgCCGGGCCccGGACU-CGGa -3'
miRNA:   3'- caCCGa--UG-GGCUCGGuuCCUGAuGCC- -5'
5246 3' -56.1 NC_001798.1 + 32365 0.7 0.70309
Target:  5'- -gGGCggcCCCGAGCCcGGGGCccGCGa -3'
miRNA:   3'- caCCGau-GGGCUCGGuUCCUGa-UGCc -5'
5246 3' -56.1 NC_001798.1 + 34835 0.69 0.771023
Target:  5'- -cGGggGCCCGGGCC--GGACcgccggGCGGg -3'
miRNA:   3'- caCCgaUGGGCUCGGuuCCUGa-----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 43654 0.71 0.683011
Target:  5'- -gGGCUGCuCCGugcuGGCCGcGGGGCUGgGGu -3'
miRNA:   3'- caCCGAUG-GGC----UCGGU-UCCUGAUgCC- -5'
5246 3' -56.1 NC_001798.1 + 45147 0.68 0.841149
Target:  5'- -aGGCUggcgcgccaccACCCGGGaCuCGAGGGCUccaccaucgACGGg -3'
miRNA:   3'- caCCGA-----------UGGGCUC-G-GUUCCUGA---------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 51298 0.72 0.6017
Target:  5'- -aGGCUACCUGGGCCcgauGGACccacgcgacguuUugGGg -3'
miRNA:   3'- caCCGAUGGGCUCGGuu--CCUG------------AugCC- -5'
5246 3' -56.1 NC_001798.1 + 52347 0.66 0.892838
Target:  5'- cGUGGCgg-CCGAGCaCGAGGcGCUgggcgacaccGCGGc -3'
miRNA:   3'- -CACCGaugGGCUCG-GUUCC-UGA----------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 56918 0.68 0.832961
Target:  5'- -cGGUUGCCCGGGUaguAGGug-GCGGc -3'
miRNA:   3'- caCCGAUGGGCUCGgu-UCCugaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 61065 1.09 0.002738
Target:  5'- aGUGGCUACCCGAGCCAAGGACUACGGc -3'
miRNA:   3'- -CACCGAUGGGCUCGGUUCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 61467 0.66 0.892838
Target:  5'- -gGGCc-UCCGGGCCccgGAGGGCUACu- -3'
miRNA:   3'- caCCGauGGGCUCGG---UUCCUGAUGcc -5'
5246 3' -56.1 NC_001798.1 + 68446 0.68 0.798478
Target:  5'- uUGGCU-CgCCGAGCaccgCGGGGAUUGCGa -3'
miRNA:   3'- cACCGAuG-GGCUCG----GUUCCUGAUGCc -5'
5246 3' -56.1 NC_001798.1 + 69272 0.67 0.886097
Target:  5'- -gGGUUACCuggCGGGUCAGGuGAUaGCGGg -3'
miRNA:   3'- caCCGAUGG---GCUCGGUUC-CUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 72144 0.68 0.841149
Target:  5'- -cGGCcACCCGGGCCGGcgucGGGCccACGa -3'
miRNA:   3'- caCCGaUGGGCUCGGUU----CCUGa-UGCc -5'
5246 3' -56.1 NC_001798.1 + 72511 0.72 0.6017
Target:  5'- cUGGCgcCCCGAgGCCAuGGGCgacGCGGu -3'
miRNA:   3'- cACCGauGGGCU-CGGUuCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 75462 0.66 0.905639
Target:  5'- gGUGGCcgGCCCG-GCCGcGGccCUGCuGGa -3'
miRNA:   3'- -CACCGa-UGGGCuCGGUuCCu-GAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 76037 0.66 0.901895
Target:  5'- -gGGC--CCCGAgGCCAuccaggcgcggcuggAGGACgUGCGGa -3'
miRNA:   3'- caCCGauGGGCU-CGGU---------------UCCUG-AUGCC- -5'
5246 3' -56.1 NC_001798.1 + 83239 0.68 0.824593
Target:  5'- -cGGCcgcggagggACCC--GCCGAGGACUcACGGg -3'
miRNA:   3'- caCCGa--------UGGGcuCGGUUCCUGA-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 88950 0.66 0.892838
Target:  5'- aUGGCgGCCUGuugcuuGUCGAGGAggACGGc -3'
miRNA:   3'- cACCGaUGGGCu-----CGGUUCCUgaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 93484 0.67 0.87195
Target:  5'- cGUGG-UGCCCGGGUacgAGGGGCgccccACGGc -3'
miRNA:   3'- -CACCgAUGGGCUCGg--UUCCUGa----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 94993 0.72 0.591557
Target:  5'- -cGGCcGCCUGGGCCccgcAGGGCggcGCGGg -3'
miRNA:   3'- caCCGaUGGGCUCGGu---UCCUGa--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.