miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 422 0.68 0.841149
Target:  5'- -cGGCaGCCCcucccccccgcGcGCCAcGGGGCUGCGGu -3'
miRNA:   3'- caCCGaUGGG-----------CuCGGU-UCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 1808 0.67 0.886097
Target:  5'- -cGuGCUGCCgCGAGaCCAcGGGCccgucgGCGGg -3'
miRNA:   3'- caC-CGAUGG-GCUC-GGUuCCUGa-----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 2040 0.67 0.879839
Target:  5'- -cGGUUGCCCaGGGCCGccagcaggcAGGACagcccgccgcgcucgGCGGa -3'
miRNA:   3'- caCCGAUGGG-CUCGGU---------UCCUGa--------------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 2113 0.66 0.899353
Target:  5'- -cGGCgcgGCCCGcGGCCAGGuccucgcccGGCaGCGGc -3'
miRNA:   3'- caCCGa--UGGGC-UCGGUUC---------CUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 2807 0.68 0.832961
Target:  5'- -cGGCaGCgCCGGGCCcAGGGCccCGGc -3'
miRNA:   3'- caCCGaUG-GGCUCGGuUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 3001 0.73 0.56133
Target:  5'- -gGGC--CCCGGGCgCGGGGGCgcgGCGGg -3'
miRNA:   3'- caCCGauGGGCUCG-GUUCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 6219 0.68 0.823746
Target:  5'- -cGGUgACCCGgggggccGGCCGggGGGACggGCGGg -3'
miRNA:   3'- caCCGaUGGGC-------UCGGU--UCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 9157 0.66 0.899353
Target:  5'- -cGGCgccGCCCGcGCCGGGGGgcagggucuCUgGCGGg -3'
miRNA:   3'- caCCGa--UGGGCuCGGUUCCU---------GA-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 11241 0.71 0.652601
Target:  5'- -gGGCcACUgcgGGGCCGAGGACUgACGGa -3'
miRNA:   3'- caCCGaUGGg--CUCGGUUCCUGA-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 15273 0.66 0.905639
Target:  5'- -cGGUgcCCCGGGUUccGGGCgugGCGGu -3'
miRNA:   3'- caCCGauGGGCUCGGuuCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 18861 0.68 0.832961
Target:  5'- -aGGCUGgCCGAGCCucugauGGACUuGCc- -3'
miRNA:   3'- caCCGAUgGGCUCGGuu----CCUGA-UGcc -5'
5246 3' -56.1 NC_001798.1 + 20854 0.68 0.824593
Target:  5'- -gGGCuUACCCucagauuccgacGAGCUggGGAggACGGg -3'
miRNA:   3'- caCCG-AUGGG------------CUCGGuuCCUgaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 22390 0.67 0.864555
Target:  5'- -gGGCggaACCCcggcGAGCCGGGGcGCgGCGGc -3'
miRNA:   3'- caCCGa--UGGG----CUCGGUUCC-UGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 23884 0.67 0.879133
Target:  5'- -gGGC-GCCCGAgGCgGAGGAggcGCGGg -3'
miRNA:   3'- caCCGaUGGGCU-CGgUUCCUga-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 26485 0.67 0.845972
Target:  5'- -gGGCgucgGCCgCGGGCCGcgcgGGGACggugcuggccgcgGCGGg -3'
miRNA:   3'- caCCGa---UGG-GCUCGGU----UCCUGa------------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 27109 0.68 0.824593
Target:  5'- -aGGUgGCCCGAGCCcccccgcAGGA--GCGGg -3'
miRNA:   3'- caCCGaUGGGCUCGGu------UCCUgaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 27166 0.75 0.446226
Target:  5'- -gGGCUGCUgCGAGCUcGGGGCcGCGGg -3'
miRNA:   3'- caCCGAUGG-GCUCGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 27295 0.68 0.81605
Target:  5'- -gGGCUGCCgCGAGCuCGgcGGGAUggaGGg -3'
miRNA:   3'- caCCGAUGG-GCUCG-GU--UCCUGaugCC- -5'
5246 3' -56.1 NC_001798.1 + 28733 0.67 0.849148
Target:  5'- -gGGCccgaGCCCGAGCCcGGGcccACgaagACGGc -3'
miRNA:   3'- caCCGa---UGGGCUCGGuUCC---UGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 30938 0.68 0.824593
Target:  5'- -cGGCgggGgUCGGGCgGGGGGCggGCGGg -3'
miRNA:   3'- caCCGa--UgGGCUCGgUUCCUGa-UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.