miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 154280 0.66 0.899353
Target:  5'- cGUGcGCaGCCCGGGCCGug--UUGCGGg -3'
miRNA:   3'- -CAC-CGaUGGGCUCGGUuccuGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 154101 0.7 0.713045
Target:  5'- -gGGCgcgGCCgGcGCCGGGGACcccgGCGGc -3'
miRNA:   3'- caCCGa--UGGgCuCGGUUCCUGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 153319 0.71 0.652601
Target:  5'- -gGGCUcggGCCCGAGCUcGGGcCU-CGGg -3'
miRNA:   3'- caCCGA---UGGGCUCGGuUCCuGAuGCC- -5'
5246 3' -56.1 NC_001798.1 + 153051 0.66 0.91751
Target:  5'- -cGGUUGgCCGGcGCCGcccccuGGGGCggGCGGa -3'
miRNA:   3'- caCCGAUgGGCU-CGGU------UCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 151594 0.7 0.70309
Target:  5'- -gGGCUGCCCuggcgcucGGCCGGGGGC--CGGg -3'
miRNA:   3'- caCCGAUGGGc-------UCGGUUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 150624 0.73 0.531541
Target:  5'- -gGGCU-CCUGGGCCGcgcGGGGCUgucucGCGGg -3'
miRNA:   3'- caCCGAuGGGCUCGGU---UCCUGA-----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 150499 0.67 0.884721
Target:  5'- uGUGGCagaccucccccCCCGGGgcCCGAGGACaccugUGCGGa -3'
miRNA:   3'- -CACCGau---------GGGCUC--GGUUCCUG-----AUGCC- -5'
5246 3' -56.1 NC_001798.1 + 149945 0.67 0.856952
Target:  5'- -cGGCgACCgCG-GCCuGGGACgACGGa -3'
miRNA:   3'- caCCGaUGG-GCuCGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 148069 0.66 0.911692
Target:  5'- gGUGGCggaaggAaaCGGGCCGGGGGC--CGGg -3'
miRNA:   3'- -CACCGa-----UggGCUCGGUUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 147206 0.68 0.832132
Target:  5'- -cGGCgguccgGCCCGGGCCcccggcggagcgcGGGGGCccCGGg -3'
miRNA:   3'- caCCGa-----UGGGCUCGG-------------UUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 144333 0.66 0.905639
Target:  5'- -cGGCgucgcaucGCCCGAcagccCCAGGGGCUGuuCGGg -3'
miRNA:   3'- caCCGa-------UGGGCUc----GGUUCCUGAU--GCC- -5'
5246 3' -56.1 NC_001798.1 + 142151 0.66 0.899353
Target:  5'- gGUGGUgcacgUGuuUGAGUCAGGGACgcgcGCGGu -3'
miRNA:   3'- -CACCG-----AUggGCUCGGUUCCUGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 138782 0.67 0.849148
Target:  5'- cGUGuGCUGCCUGAGaaacgcccCCAGGcGCUGCGu -3'
miRNA:   3'- -CAC-CGAUGGGCUC--------GGUUCcUGAUGCc -5'
5246 3' -56.1 NC_001798.1 + 135234 0.75 0.455341
Target:  5'- -gGGCUGCCgGaAGcCCGGGGGCggGCGGg -3'
miRNA:   3'- caCCGAUGGgC-UC-GGUUCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 132132 0.69 0.752092
Target:  5'- -aGGCgGCCCugcgccGCCGGGGGCcgGCGGg -3'
miRNA:   3'- caCCGaUGGGcu----CGGUUCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 127611 0.7 0.722932
Target:  5'- gGUGucGCUgccGCCCGAGCUGAGGccGCUGCuGGu -3'
miRNA:   3'- -CAC--CGA---UGGGCUCGGUUCC--UGAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 125772 0.7 0.693075
Target:  5'- uUGGCcGagacgcaccUCCGGGCCGAGGugUACaGGg -3'
miRNA:   3'- cACCGaU---------GGGCUCGGUUCCugAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 125452 0.7 0.722932
Target:  5'- cGUGGagcguCCCGAcGCCcGGGACcACGGu -3'
miRNA:   3'- -CACCgau--GGGCU-CGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 124487 0.7 0.70309
Target:  5'- -aGGCUuccCCCccGCCAuggcggggggGGGGCUGCGGg -3'
miRNA:   3'- caCCGAu--GGGcuCGGU----------UCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 122137 0.67 0.886097
Target:  5'- -gGGCc-CCCGGGCCGcGGGCga-GGa -3'
miRNA:   3'- caCCGauGGGCUCGGUuCCUGaugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.