miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 61065 1.09 0.002738
Target:  5'- aGUGGCUACCCGAGCCAAGGACUACGGc -3'
miRNA:   3'- -CACCGAUGGGCUCGGUUCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 97586 0.76 0.385433
Target:  5'- -cGGC--CCCGAGCCAGGGGCgcaGGg -3'
miRNA:   3'- caCCGauGGGCUCGGUUCCUGaugCC- -5'
5246 3' -56.1 NC_001798.1 + 27166 0.75 0.446226
Target:  5'- -gGGCUGCUgCGAGCUcGGGGCcGCGGg -3'
miRNA:   3'- caCCGAUGG-GCUCGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 135234 0.75 0.455341
Target:  5'- -gGGCUGCCgGaAGcCCGGGGGCggGCGGg -3'
miRNA:   3'- caCCGAUGGgC-UC-GGUUCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 150624 0.73 0.531541
Target:  5'- -gGGCU-CCUGGGCCGcgcGGGGCUgucucGCGGg -3'
miRNA:   3'- caCCGAuGGGCUCGGU---UCCUGA-----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 3001 0.73 0.56133
Target:  5'- -gGGC--CCCGGGCgCGGGGGCgcgGCGGg -3'
miRNA:   3'- caCCGauGGGCUCG-GUUCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 94993 0.72 0.591557
Target:  5'- -cGGCcGCCUGGGCCccgcAGGGCggcGCGGg -3'
miRNA:   3'- caCCGaUGGGCUCGGu---UCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 51298 0.72 0.6017
Target:  5'- -aGGCUACCUGGGCCcgauGGACccacgcgacguuUugGGg -3'
miRNA:   3'- caCCGAUGGGCUCGGuu--CCUG------------AugCC- -5'
5246 3' -56.1 NC_001798.1 + 72511 0.72 0.6017
Target:  5'- cUGGCgcCCCGAgGCCAuGGGCgacGCGGu -3'
miRNA:   3'- cACCGauGGGCU-CGGUuCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 108766 0.72 0.622046
Target:  5'- cUGGCUGgCC--GCCAGGGccuGCUACGGa -3'
miRNA:   3'- cACCGAUgGGcuCGGUUCC---UGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 153319 0.71 0.652601
Target:  5'- -gGGCUcggGCCCGAGCUcGGGcCU-CGGg -3'
miRNA:   3'- caCCGA---UGGGCUCGGuUCCuGAuGCC- -5'
5246 3' -56.1 NC_001798.1 + 11241 0.71 0.652601
Target:  5'- -gGGCcACUgcgGGGCCGAGGACUgACGGa -3'
miRNA:   3'- caCCGaUGGg--CUCGGUUCCUGA-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 43654 0.71 0.683011
Target:  5'- -gGGCUGCuCCGugcuGGCCGcGGGGCUGgGGu -3'
miRNA:   3'- caCCGAUG-GGC----UCGGU-UCCUGAUgCC- -5'
5246 3' -56.1 NC_001798.1 + 125772 0.7 0.693075
Target:  5'- uUGGCcGagacgcaccUCCGGGCCGAGGugUACaGGg -3'
miRNA:   3'- cACCGaU---------GGGCUCGGUUCCugAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 32365 0.7 0.70309
Target:  5'- -gGGCggcCCCGAGCCcGGGGCccGCGa -3'
miRNA:   3'- caCCGau-GGGCUCGGuUCCUGa-UGCc -5'
5246 3' -56.1 NC_001798.1 + 124487 0.7 0.70309
Target:  5'- -aGGCUuccCCCccGCCAuggcggggggGGGGCUGCGGg -3'
miRNA:   3'- caCCGAu--GGGcuCGGU----------UCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 151594 0.7 0.70309
Target:  5'- -gGGCUGCCCuggcgcucGGCCGGGGGC--CGGg -3'
miRNA:   3'- caCCGAUGGGc-------UCGGUUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 154101 0.7 0.713045
Target:  5'- -gGGCgcgGCCgGcGCCGGGGACcccgGCGGc -3'
miRNA:   3'- caCCGa--UGGgCuCGGUUCCUGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 106097 0.7 0.713045
Target:  5'- -cGGCgACCCGGcGCCGcgaccgccGGGuCUGCGGu -3'
miRNA:   3'- caCCGaUGGGCU-CGGU--------UCCuGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 127611 0.7 0.722932
Target:  5'- gGUGucGCUgccGCCCGAGCUGAGGccGCUGCuGGu -3'
miRNA:   3'- -CAC--CGA---UGGGCUCGGUUCC--UGAUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.