Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5246 | 3' | -56.1 | NC_001798.1 | + | 125452 | 0.7 | 0.722932 |
Target: 5'- cGUGGagcguCCCGAcGCCcGGGACcACGGu -3' miRNA: 3'- -CACCgau--GGGCU-CGGuUCCUGaUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 132132 | 0.69 | 0.752092 |
Target: 5'- -aGGCgGCCCugcgccGCCGGGGGCcgGCGGg -3' miRNA: 3'- caCCGaUGGGcu----CGGUUCCUGa-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 34835 | 0.69 | 0.771023 |
Target: 5'- -cGGggGCCCGGGCC--GGACcgccggGCGGg -3' miRNA: 3'- caCCgaUGGGCUCGGuuCCUGa-----UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 102419 | 0.69 | 0.771023 |
Target: 5'- -cGGCgAUCUGGGCCuccaGGGGACUGgGGc -3' miRNA: 3'- caCCGaUGGGCUCGG----UUCCUGAUgCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 68446 | 0.68 | 0.798478 |
Target: 5'- uUGGCU-CgCCGAGCaccgCGGGGAUUGCGa -3' miRNA: 3'- cACCGAuG-GGCUCG----GUUCCUGAUGCc -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 111582 | 0.68 | 0.807343 |
Target: 5'- --aGCUcCCUGAGCgGGGGGCccgGCGGg -3' miRNA: 3'- cacCGAuGGGCUCGgUUCCUGa--UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 31998 | 0.68 | 0.81605 |
Target: 5'- -cGGCgccGCgCCGGGCCccGGACU-CGGa -3' miRNA: 3'- caCCGa--UG-GGCUCGGuuCCUGAuGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 27295 | 0.68 | 0.81605 |
Target: 5'- -gGGCUGCCgCGAGCuCGgcGGGAUggaGGg -3' miRNA: 3'- caCCGAUGG-GCUCG-GU--UCCUGaugCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 6219 | 0.68 | 0.823746 |
Target: 5'- -cGGUgACCCGgggggccGGCCGggGGGACggGCGGg -3' miRNA: 3'- caCCGaUGGGC-------UCGGU--UCCUGa-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 83239 | 0.68 | 0.824593 |
Target: 5'- -cGGCcgcggagggACCC--GCCGAGGACUcACGGg -3' miRNA: 3'- caCCGa--------UGGGcuCGGUUCCUGA-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 30938 | 0.68 | 0.824593 |
Target: 5'- -cGGCgggGgUCGGGCgGGGGGCggGCGGg -3' miRNA: 3'- caCCGa--UgGGCUCGgUUCCUGa-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 27109 | 0.68 | 0.824593 |
Target: 5'- -aGGUgGCCCGAGCCcccccgcAGGA--GCGGg -3' miRNA: 3'- caCCGaUGGGCUCGGu------UCCUgaUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 20854 | 0.68 | 0.824593 |
Target: 5'- -gGGCuUACCCucagauuccgacGAGCUggGGAggACGGg -3' miRNA: 3'- caCCG-AUGGG------------CUCGGuuCCUgaUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 147206 | 0.68 | 0.832132 |
Target: 5'- -cGGCgguccgGCCCGGGCCcccggcggagcgcGGGGGCccCGGg -3' miRNA: 3'- caCCGa-----UGGGCUCGG-------------UUCCUGauGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 56918 | 0.68 | 0.832961 |
Target: 5'- -cGGUUGCCCGGGUaguAGGug-GCGGc -3' miRNA: 3'- caCCGAUGGGCUCGgu-UCCugaUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 2807 | 0.68 | 0.832961 |
Target: 5'- -cGGCaGCgCCGGGCCcAGGGCccCGGc -3' miRNA: 3'- caCCGaUG-GGCUCGGuUCCUGauGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 18861 | 0.68 | 0.832961 |
Target: 5'- -aGGCUGgCCGAGCCucugauGGACUuGCc- -3' miRNA: 3'- caCCGAUgGGCUCGGuu----CCUGA-UGcc -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 422 | 0.68 | 0.841149 |
Target: 5'- -cGGCaGCCCcucccccccgcGcGCCAcGGGGCUGCGGu -3' miRNA: 3'- caCCGaUGGG-----------CuCGGU-UCCUGAUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 45147 | 0.68 | 0.841149 |
Target: 5'- -aGGCUggcgcgccaccACCCGGGaCuCGAGGGCUccaccaucgACGGg -3' miRNA: 3'- caCCGA-----------UGGGCUC-G-GUUCCUGA---------UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 72144 | 0.68 | 0.841149 |
Target: 5'- -cGGCcACCCGGGCCGGcgucGGGCccACGa -3' miRNA: 3'- caCCGaUGGGCUCGGUU----CCUGa-UGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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