miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 101739 0.67 0.881944
Target:  5'- -cGGCgGCCCGGGCCGuguccacguucacguGGGccgcGCUGCuGGc -3'
miRNA:   3'- caCCGaUGGGCUCGGU---------------UCC----UGAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 2040 0.67 0.879839
Target:  5'- -cGGUUGCCCaGGGCCGccagcaggcAGGACagcccgccgcgcucgGCGGa -3'
miRNA:   3'- caCCGAUGGG-CUCGGU---------UCCUGa--------------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 23884 0.67 0.879133
Target:  5'- -gGGC-GCCCGAgGCgGAGGAggcGCGGg -3'
miRNA:   3'- caCCGaUGGGCU-CGgUUCCUga-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 111632 0.67 0.87195
Target:  5'- -cGGCagACUCGcGUCGGGGGCgcucgGCGGg -3'
miRNA:   3'- caCCGa-UGGGCuCGGUUCCUGa----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 93484 0.67 0.87195
Target:  5'- cGUGG-UGCCCGGGUacgAGGGGCgccccACGGc -3'
miRNA:   3'- -CACCgAUGGGCUCGg--UUCCUGa----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 22390 0.67 0.864555
Target:  5'- -gGGCggaACCCcggcGAGCCGGGGcGCgGCGGc -3'
miRNA:   3'- caCCGa--UGGG----CUCGGUUCC-UGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 149945 0.67 0.856952
Target:  5'- -cGGCgACCgCG-GCCuGGGACgACGGa -3'
miRNA:   3'- caCCGaUGG-GCuCGGuUCCUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 28733 0.67 0.849148
Target:  5'- -gGGCccgaGCCCGAGCCcGGGcccACgaagACGGc -3'
miRNA:   3'- caCCGa---UGGGCUCGGuUCC---UGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 138782 0.67 0.849148
Target:  5'- cGUGuGCUGCCUGAGaaacgcccCCAGGcGCUGCGu -3'
miRNA:   3'- -CAC-CGAUGGGCUC--------GGUUCcUGAUGCc -5'
5246 3' -56.1 NC_001798.1 + 26485 0.67 0.845972
Target:  5'- -gGGCgucgGCCgCGGGCCGcgcgGGGACggugcuggccgcgGCGGg -3'
miRNA:   3'- caCCGa---UGG-GCUCGGU----UCCUGa------------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 422 0.68 0.841149
Target:  5'- -cGGCaGCCCcucccccccgcGcGCCAcGGGGCUGCGGu -3'
miRNA:   3'- caCCGaUGGG-----------CuCGGU-UCCUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 45147 0.68 0.841149
Target:  5'- -aGGCUggcgcgccaccACCCGGGaCuCGAGGGCUccaccaucgACGGg -3'
miRNA:   3'- caCCGA-----------UGGGCUC-G-GUUCCUGA---------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 72144 0.68 0.841149
Target:  5'- -cGGCcACCCGGGCCGGcgucGGGCccACGa -3'
miRNA:   3'- caCCGaUGGGCUCGGUU----CCUGa-UGCc -5'
5246 3' -56.1 NC_001798.1 + 109366 0.68 0.841149
Target:  5'- cUGGCcGCCCGGGgagCAGcGGGCUGCGcGg -3'
miRNA:   3'- cACCGaUGGGCUCg--GUU-CCUGAUGC-C- -5'
5246 3' -56.1 NC_001798.1 + 56918 0.68 0.832961
Target:  5'- -cGGUUGCCCGGGUaguAGGug-GCGGc -3'
miRNA:   3'- caCCGAUGGGCUCGgu-UCCugaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 2807 0.68 0.832961
Target:  5'- -cGGCaGCgCCGGGCCcAGGGCccCGGc -3'
miRNA:   3'- caCCGaUG-GGCUCGGuUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 18861 0.68 0.832961
Target:  5'- -aGGCUGgCCGAGCCucugauGGACUuGCc- -3'
miRNA:   3'- caCCGAUgGGCUCGGuu----CCUGA-UGcc -5'
5246 3' -56.1 NC_001798.1 + 147206 0.68 0.832132
Target:  5'- -cGGCgguccgGCCCGGGCCcccggcggagcgcGGGGGCccCGGg -3'
miRNA:   3'- caCCGa-----UGGGCUCGG-------------UUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 30938 0.68 0.824593
Target:  5'- -cGGCgggGgUCGGGCgGGGGGCggGCGGg -3'
miRNA:   3'- caCCGa--UgGGCUCGgUUCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 27109 0.68 0.824593
Target:  5'- -aGGUgGCCCGAGCCcccccgcAGGA--GCGGg -3'
miRNA:   3'- caCCGaUGGGCUCGGu------UCCUgaUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.