Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5246 | 3' | -56.1 | NC_001798.1 | + | 30938 | 0.68 | 0.824593 |
Target: 5'- -cGGCgggGgUCGGGCgGGGGGCggGCGGg -3' miRNA: 3'- caCCGa--UgGGCUCGgUUCCUGa-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 83239 | 0.68 | 0.824593 |
Target: 5'- -cGGCcgcggagggACCC--GCCGAGGACUcACGGg -3' miRNA: 3'- caCCGa--------UGGGcuCGGUUCCUGA-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 6219 | 0.68 | 0.823746 |
Target: 5'- -cGGUgACCCGgggggccGGCCGggGGGACggGCGGg -3' miRNA: 3'- caCCGaUGGGC-------UCGGU--UCCUGa-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 31998 | 0.68 | 0.81605 |
Target: 5'- -cGGCgccGCgCCGGGCCccGGACU-CGGa -3' miRNA: 3'- caCCGa--UG-GGCUCGGuuCCUGAuGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 27295 | 0.68 | 0.81605 |
Target: 5'- -gGGCUGCCgCGAGCuCGgcGGGAUggaGGg -3' miRNA: 3'- caCCGAUGG-GCUCG-GU--UCCUGaugCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 111582 | 0.68 | 0.807343 |
Target: 5'- --aGCUcCCUGAGCgGGGGGCccgGCGGg -3' miRNA: 3'- cacCGAuGGGCUCGgUUCCUGa--UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 68446 | 0.68 | 0.798478 |
Target: 5'- uUGGCU-CgCCGAGCaccgCGGGGAUUGCGa -3' miRNA: 3'- cACCGAuG-GGCUCG----GUUCCUGAUGCc -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 102419 | 0.69 | 0.771023 |
Target: 5'- -cGGCgAUCUGGGCCuccaGGGGACUGgGGc -3' miRNA: 3'- caCCGaUGGGCUCGG----UUCCUGAUgCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 34835 | 0.69 | 0.771023 |
Target: 5'- -cGGggGCCCGGGCC--GGACcgccggGCGGg -3' miRNA: 3'- caCCgaUGGGCUCGGuuCCUGa-----UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 132132 | 0.69 | 0.752092 |
Target: 5'- -aGGCgGCCCugcgccGCCGGGGGCcgGCGGg -3' miRNA: 3'- caCCGaUGGGcu----CGGUUCCUGa-UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 127611 | 0.7 | 0.722932 |
Target: 5'- gGUGucGCUgccGCCCGAGCUGAGGccGCUGCuGGu -3' miRNA: 3'- -CAC--CGA---UGGGCUCGGUUCC--UGAUG-CC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 125452 | 0.7 | 0.722932 |
Target: 5'- cGUGGagcguCCCGAcGCCcGGGACcACGGu -3' miRNA: 3'- -CACCgau--GGGCU-CGGuUCCUGaUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 106097 | 0.7 | 0.713045 |
Target: 5'- -cGGCgACCCGGcGCCGcgaccgccGGGuCUGCGGu -3' miRNA: 3'- caCCGaUGGGCU-CGGU--------UCCuGAUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 154101 | 0.7 | 0.713045 |
Target: 5'- -gGGCgcgGCCgGcGCCGGGGACcccgGCGGc -3' miRNA: 3'- caCCGa--UGGgCuCGGUUCCUGa---UGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 124487 | 0.7 | 0.70309 |
Target: 5'- -aGGCUuccCCCccGCCAuggcggggggGGGGCUGCGGg -3' miRNA: 3'- caCCGAu--GGGcuCGGU----------UCCUGAUGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 151594 | 0.7 | 0.70309 |
Target: 5'- -gGGCUGCCCuggcgcucGGCCGGGGGC--CGGg -3' miRNA: 3'- caCCGAUGGGc-------UCGGUUCCUGauGCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 32365 | 0.7 | 0.70309 |
Target: 5'- -gGGCggcCCCGAGCCcGGGGCccGCGa -3' miRNA: 3'- caCCGau-GGGCUCGGuUCCUGa-UGCc -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 125772 | 0.7 | 0.693075 |
Target: 5'- uUGGCcGagacgcaccUCCGGGCCGAGGugUACaGGg -3' miRNA: 3'- cACCGaU---------GGGCUCGGUUCCugAUG-CC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 43654 | 0.71 | 0.683011 |
Target: 5'- -gGGCUGCuCCGugcuGGCCGcGGGGCUGgGGu -3' miRNA: 3'- caCCGAUG-GGC----UCGGU-UCCUGAUgCC- -5' |
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5246 | 3' | -56.1 | NC_001798.1 | + | 11241 | 0.71 | 0.652601 |
Target: 5'- -gGGCcACUgcgGGGCCGAGGACUgACGGa -3' miRNA: 3'- caCCGaUGGg--CUCGGUUCCUGA-UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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