miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5247 5' -59.3 NC_001798.1 + 60451 1.09 0.001232
Target:  5'- cGUCUCGCUGGCAAGCUCCACGGCCUCu -3'
miRNA:   3'- -CAGAGCGACCGUUCGAGGUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 4715 0.75 0.270363
Target:  5'- cGUC-CGC-GGCAGGCUCgucgACGGCCUCc -3'
miRNA:   3'- -CAGaGCGaCCGUUCGAGg---UGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 76694 0.73 0.371083
Target:  5'- -gCUCGCUccggaGGCGcGCUCC-CGGCUUCg -3'
miRNA:   3'- caGAGCGA-----CCGUuCGAGGuGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 23015 0.72 0.421441
Target:  5'- cGUCUCGCcgcGGCAgcuGGCcCUGCuGGCCUCg -3'
miRNA:   3'- -CAGAGCGa--CCGU---UCGaGGUG-CCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 69539 0.69 0.533218
Target:  5'- -gCUCGCgcgGGCugguGGUgguuUCCACGGCaCUCu -3'
miRNA:   3'- caGAGCGa--CCGu---UCG----AGGUGCCG-GAG- -5'
5247 5' -59.3 NC_001798.1 + 3095 0.69 0.533218
Target:  5'- aUCcCGC-GGCAGGCggccaggcacUCCACGGCCa- -3'
miRNA:   3'- cAGaGCGaCCGUUCG----------AGGUGCCGGag -5'
5247 5' -59.3 NC_001798.1 + 53755 0.69 0.572909
Target:  5'- ----gGCUGaGCGAGCUCC-UGGCCUa -3'
miRNA:   3'- cagagCGAC-CGUUCGAGGuGCCGGAg -5'
5247 5' -59.3 NC_001798.1 + 150646 0.69 0.58295
Target:  5'- uGUCUCGCggggGGCGuccuGCccuccgccgCCGCGGCgUCu -3'
miRNA:   3'- -CAGAGCGa---CCGUu---CGa--------GGUGCCGgAG- -5'
5247 5' -59.3 NC_001798.1 + 150606 0.68 0.593025
Target:  5'- --gUCGCugaugacuaUGGgGGGCUCCugGGCCg- -3'
miRNA:   3'- cagAGCG---------ACCgUUCGAGGugCCGGag -5'
5247 5' -59.3 NC_001798.1 + 109523 0.68 0.613254
Target:  5'- -gCUaucaGCUGGCGuucguguuggacAGCcCCGCGGCCUa -3'
miRNA:   3'- caGAg---CGACCGU------------UCGaGGUGCCGGAg -5'
5247 5' -59.3 NC_001798.1 + 32735 0.68 0.613254
Target:  5'- ---gCGCUGGac--UUCCACGGCCUCc -3'
miRNA:   3'- cagaGCGACCguucGAGGUGCCGGAG- -5'
5247 5' -59.3 NC_001798.1 + 2786 0.68 0.613254
Target:  5'- -gCUCaGCaGGCGcgGGCUCCGCGGCa-- -3'
miRNA:   3'- caGAG-CGaCCGU--UCGAGGUGCCGgag -5'
5247 5' -59.3 NC_001798.1 + 138733 0.68 0.623393
Target:  5'- ----gGCcGGCGcGCUCCGCGGCCcCg -3'
miRNA:   3'- cagagCGaCCGUuCGAGGUGCCGGaG- -5'
5247 5' -59.3 NC_001798.1 + 95344 0.68 0.623393
Target:  5'- -aUUCGCUGuGCGagcAGCUCCGgGGCaUCa -3'
miRNA:   3'- caGAGCGAC-CGU---UCGAGGUgCCGgAG- -5'
5247 5' -59.3 NC_001798.1 + 96437 0.68 0.633538
Target:  5'- ---aCGCgUGGCGcgagggggagcGGCUCCugGGCCa- -3'
miRNA:   3'- cagaGCG-ACCGU-----------UCGAGGugCCGGag -5'
5247 5' -59.3 NC_001798.1 + 81400 0.68 0.643683
Target:  5'- -cCUCGCaugugGGCcuGGaUCCACGGCCUg -3'
miRNA:   3'- caGAGCGa----CCGu-UCgAGGUGCCGGAg -5'
5247 5' -59.3 NC_001798.1 + 77801 0.67 0.653818
Target:  5'- ---gCGCUGGCGGGCaCgCACGGCUa- -3'
miRNA:   3'- cagaGCGACCGUUCGaG-GUGCCGGag -5'
5247 5' -59.3 NC_001798.1 + 76444 0.67 0.653818
Target:  5'- ----aGCUGGCGcgcAGCaUCCACGGCaUCa -3'
miRNA:   3'- cagagCGACCGU---UCG-AGGUGCCGgAG- -5'
5247 5' -59.3 NC_001798.1 + 105367 0.67 0.663936
Target:  5'- aUgUCGacgGGC-AGCUCgGCGGCCUg -3'
miRNA:   3'- cAgAGCga-CCGuUCGAGgUGCCGGAg -5'
5247 5' -59.3 NC_001798.1 + 93286 0.67 0.663936
Target:  5'- cGUCggggCGUaccUGGCGcGCgCCGCGGgCCUCg -3'
miRNA:   3'- -CAGa---GCG---ACCGUuCGaGGUGCC-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.